Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq27 141 2e-28 seq19 87.8 4e-12 >seq27 Length=1720986 Score = 141 bits (156), Expect = 2e-28 Identities = 150/195 (77%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || ||||| || |||||| | || || || || ||| Sbjct 554021 CAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGAC 554080 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || |||||||| ||||| || || || || |||||| Sbjct 554081 ACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAGCAA 554140 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || |||||||||||||| | || |||||||| || |||| ||||||| ||| | Sbjct 554141 AGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAAC-CTTGTCCGATTACAACAT 554199 Query 178103 CCAAAAAGAATCAAC 178117 |||||||||||| || Sbjct 554200 CCAAAAAGAATCCAC 554214 Score = 138 bits (152), Expect = 3e-27 Identities = 149/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || || || ||||| || |||||| | || || || || ||| Sbjct 553565 CAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGAC 553624 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || |||||||| || || || || |||||| Sbjct 553625 ACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAGCAA 553684 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || |||||||||||||| | || |||||||| || |||| ||||||| ||| | Sbjct 553685 AGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAAC-CTTGTCCGATTACAACAT 553743 Query 178103 CCAAAAAGAATCAAC 178117 |||||||||||| || Sbjct 553744 CCAAAAAGAATCCAC 553758 Score = 138 bits (152), Expect = 3e-27 Identities = 149/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || ||||| || |||||| | || || || || ||| Sbjct 553793 CAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGAC 553852 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || |||||||| || || || || |||||| Sbjct 553853 ACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAGCAA 553912 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || |||||||||||||| | || |||||||| || |||| ||||||| ||| | Sbjct 553913 AGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAAC-CTTGTCCGATTACAACAT 553971 Query 178103 CCAAAAAGAATCAAC 178117 |||||||||||| || Sbjct 553972 CCAAAAAGAATCCAC 553986 Score = 138 bits (152), Expect = 3e-27 Identities = 149/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || ||||| || |||||| | || || || || ||| Sbjct 554249 CAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGAC 554308 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || |||||||| || || || || |||||| Sbjct 554309 ACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAGCAA 554368 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || |||||||||||||| | || |||||||| || |||| ||||||| ||| | Sbjct 554369 AGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAAC-CTTGTCCGATTACAACAT 554427 Query 178103 CCAAAAAGAATCAAC 178117 |||||||||||| || Sbjct 554428 CCAAAAAGAATCCAC 554442 Score = 138 bits (152), Expect = 3e-27 Identities = 149/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || ||||| || |||||| | || || || || ||| Sbjct 554477 CAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGAC 554536 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || |||||||| || || || || |||||| Sbjct 554537 ACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAGCAA 554596 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || |||||||||||||| | || |||||||| || |||| ||||||| ||| | Sbjct 554597 AGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAAC-CTTGTCCGATTACAACAT 554655 Query 178103 CCAAAAAGAATCAAC 178117 |||||||||||| || Sbjct 554656 CCAAAAAGAATCCAC 554670 Score = 132 bits (146), Expect = 1e-25 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || ||||| || |||||| | || || || || ||| Sbjct 554705 CAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGAC 554764 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || |||||||| ||||| || || || || |||||| Sbjct 554765 ACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAGCAA 554824 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || |||||||||||||| | || || ||||| || |||| ||||||| ||| | Sbjct 554825 AGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAAC-CTTGTCCGATTACAACAT 554883 Query 178103 CCAAAAAGAATCAAC 178117 |||||| ||||| || Sbjct 554884 CCAAAAGGAATCCAC 554898 Score = 107 bits (118), Expect = 5e-18 Identities = 129/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 ||||||| || |||||| | || || || || ||||| || || || || ||| | Sbjct 553359 CAGGAAAGACCATCACCTTGGATGTAGAGTCATCCGACACGATTGAAAATGTAAAAGCTA 553418 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | || || || |||||||| || || || || |||||| |||| || ||||||||||||| Sbjct 553419 AAATACAAGATAAAGAAGGTATTCCCCCCGATCAGCAAAGACTCATTTTCGCCGGAAAAC 553478 Query 178066 AGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAAC 178117 | | || || ||||| || |||| |||| || ||| ||||||| ||||| || Sbjct 553479 AATTAGAGGACGGAAGAAC-CTTGTCCGACTACAACATCCAAAAGGAATCCAC 553530 >seq19 Length=2400328 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| || | ||||| ||||| | || |||||||| |||||||| || ||||| Sbjct 232721 AAAATGC---AAGTATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAG 232777 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||| || ||| ||| ||| |||| || ||||||||||| || Sbjct 232778 GCATCCGAAACGATTAGGAATGTTAAATCAAAAATTGAGGATAAGGAAGGAATCCCACCT 232837 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || || | || || | | ||||| ||| | || |||| ||| | | || || Sbjct 232838 GATCAACAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGAC 232897 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || |||| |||| Sbjct 232898 TACAACATCCAGAAGGAGTCCACCTTGCA-CTTG 232930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730768161432