Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1601 91.5 3e-13 seq15 87.8 4e-12 seq6892 84.2 5e-11 >seq1601 Length=10099 Score = 91.5 bits (100), Expect = 3e-13 Identities = 247/373 (66%), Gaps = 4/373 (1%) Strand=Plus/Plus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| | | || || || || ||| | | |||||| || ||| | | |||| |||| Sbjct 6425 TTTATAATGCTTCTACGTCAGAATTATTTGGAAAGGTAAAAGCAGCTATTCAAGATGAAA 6484 Query 61144 GGACTCCGTTTTATCCTCGTAGC-CCGTATGGTGTTGCAAAACTATACGCTTACTGGATT 61202 || || ||||||||| ||| | || |||| | |||||||| | || || | | || Sbjct 6485 ATACGCCATTTTATCCT-GTATCACCATATGCTATTGCAAAATTGTATGCCCATTATATA 6543 Query 61203 TGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCG-ATTTGTTTCAATCA 61261 | |||||| | || || ||| |||||| | ||| | | | || | || ||||| Sbjct 6544 ACAATAAATTATAGGGAATCATATAATATGTTT-TGTGTGAATGGCATATTATTTAATCA 6602 Query 61262 CGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAA 61321 || ||||| | ||||| | ||||| ||| | ||||| || | || |||||| Sbjct 6603 TGAAAGTCCAAGAAGAGGGGAAACATTTGTTACTAGGAAAATAACTAGGGGTATTGCAAG 6662 Query 61322 TATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTG 61381 |||| ||| ||| ||| | || ||||||| || || | | |||||||| Sbjct 6663 AATTTGTAAAAATGTTCAAACAGTTATAACGTTAGGAAATATTGATACATACAGAGATTG 6722 Query 61382 GGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGA 61441 ||| |||| |||||||| | | || |||| || ||||| |||||||||| || || Sbjct 6723 GGGGCATGCTAAAGATTATGTACATGCCATGTATTTAATGTTACAACAAGATAAACCTGA 6782 Query 61442 TGACTACGTTATT 61454 || | |||||| Sbjct 6783 CGATTTTGTTATT 6795 >seq15 Length=2386 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 2047 TAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 2102 >seq6892 Length=3356 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 2072 TGCCTCTTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAG 2013 Query 165769 CCCC 165772 ||| Sbjct 2012 TCCC 2009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057725467000100