Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1502 118 1e-21 >seq1502 Length=19671 Score = 118 bits (130), Expect = 1e-21 Identities = 490/762 (64%), Gaps = 17/762 (2%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 |||||| | | || |||||| ||| | |||||||||||| || ||||| || | ||| Sbjct 5905 ACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGA 5846 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGT 16783 ||||| ||||| ||| ||||||||| | | |||| | ||| ||| | || | Sbjct 5845 GATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCTAAA 5786 Query 16784 TCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATT 16843 | | |||||||| || |||||||| || ||||| |||||||| | |||||| Sbjct 5785 CATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCATT 5726 Query 16844 CCTAT-AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC 16902 ||||| ||| | | || | || ||| | |||| | | |||| | || ||||| Sbjct 5725 CCTATCAAGTCACA-AGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTGCTTC 5667 Query 16903 CTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAG 16962 || | |||| | ||| ||| || | | ||| || || | || | || | Sbjct 5666 TTTTACAATATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACTATATATTAA 5607 Query 16963 ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAA 17022 ||| || || ||||||||| || ||||| || || | ||| ||| ||| || | Sbjct 5606 ACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAG 5547 Query 17023 CCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAA 17082 ||| | | || | |||| || ||||| || || || || ||| ||| || Sbjct 5546 CCCATGTAATTTATTTTGTTTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAA 5487 Query 17083 TATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACG 17142 |||||| || || ||||| || | || ||||| || | | | | ||| Sbjct 5486 TATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAA---AGAATTGGTATTATT 5430 Query 17143 AATCCATTTCTGCA-CCCACTCGGCTTTTTGCTTTA----TGCAATCCATCGTTTCTATG 17197 ||||||||| ||| ||||| ||||| | || | || || || ||||||| Sbjct 5429 AATCCATTT-GGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTAT--AT--TTTCTATT 5375 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || | |||||| || | |||| | || ||||||| |||| || | | ||| Sbjct 5374 GCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACTG 5315 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 || |||| || || || ||||||| ||||| ||||| ||||| |||||| Sbjct 5314 TAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTCC 5255 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTC-CGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | ||||||||||| | | || || | | || | |||||| || || || || || Sbjct 5254 GTTATTTGAACTT-CTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCATCACT 5196 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTC 17418 || || ||||| || || | ||| || || |||| |||||| Sbjct 5195 TGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTC 5154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517498568043600