Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1378 307 1e-78 seq1502 165 1e-35 >seq1378 Length=4202 Score = 307 bits (340), Expect = 1e-78 Identities = 1095/1696 (65%), Gaps = 34/1696 (2%) Strand=Plus/Minus Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 || ||||| || |||||| || |||||||| | || || |||||||| |||||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 53009 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATAGAT 53065 || | ||||| || | | ||| | ||| | || | | || ||| ||| | | | Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 2202 Query 53066 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 53125 ||| || | || | | | || || || || | |||||| || ||| || | Sbjct 2201 CCATTATGCGCAATTAACTGCTGTTTCATATCTTCGTCCCATAAGCCCCTATCGAATAGA 2142 Query 53126 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 53185 || | | | ||| || ||||| || |||||||||| ||| ||||| | | ||| Sbjct 2141 TCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAA 2082 Query 53186 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 53245 || ||||| ||||| ||||| | || || ||||| || | ||||||| || || ||| Sbjct 2081 ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCA 2022 Query 53246 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 53305 || ||||||||||| | | |||| ||| || | ||| | | | | ||||| ||| Sbjct 2021 GTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTT 1962 Query 53306 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT-----TGTA 53360 || ||||||||||| | | || | | | | |||| Sbjct 1961 AGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTA 1904 Query 53361 GAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 53419 ||||||| | ||| || | || | ||| ||| | || || ||||| | || ||| Sbjct 1903 GAATACCTTGACTAGCTGGACTACCCTG-ATAAGATTCATAAGGTCCATGAATCATTGCT 1845 Query 53420 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAG 53478 | ||| | | ||||| ||| | || || ||||||||||| || ||||| ||| | Sbjct 1844 AATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-ATTCAA 1786 Query 53479 ATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 53537 |||| ||||| | | | ||| | ||||| | || || ||||| | |||||||| | Sbjct 1785 CTCTTTAGCTTC-ATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACC 1727 Query 53538 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 53597 | |||||||| ||||| ||||||||||| ||||| ||||| | || |||||| ||||| Sbjct 1726 CCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAG 1667 Query 53598 GATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCT 53657 | |||||||| | || || ||||||| || ||||| ||| | ||| | || | Sbjct 1666 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1607 Query 53658 TCAGTTTGAGAAAATCAAATTGTCCAT----CTATT--ACAAACATGTTCAATGCAATAG 53711 | ||| ||||| ||||| | | | | | ||||| || || ||||||| Sbjct 1606 ATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAATAG 1547 Query 53712 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 53771 | || |||||||| || || || |||| || | ||| | || || ||| || | Sbjct 1546 AAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACACA 1487 Query 53772 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 53831 ||||||||| ||||| || |||| ||||| |||||| || ||||| | || | Sbjct 1486 AATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTCTT 1427 Query 53832 TATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGA 53891 |||| | || |||| ||| |||||||| || || || || || ||| | Sbjct 1426 TATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAAAT 1367 Query 53892 CACGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATC 53948 | | || || || || ||| | | | |||||| ||| || ||| ||| Sbjct 1366 CTTGTGC---TAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATAATT 1310 Query 53949 GTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 54008 |||||| || || ||||| | | ||| || ||||||| |||||||| || | Sbjct 1309 TTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTAAAG 1250 Query 54009 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 54068 ||| | | | || || |||| |||||| || | ||||||| ||||| ||| || Sbjct 1249 TCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATAAA 1190 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 | | |||||| | ||| ||| || || || ||| ||| | | ||| | || | | Sbjct 1189 ACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTCGA 1130 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 ||||| |||||||| ||||| | || | | | | || | ||| ||||| Sbjct 1129 ATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCCTC 1070 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248 | ||||||| |||||||| || | |||| ||||||| ||||| || | | ||||| | Sbjct 1069 CTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCATTTG 1010 Query 54249 ATGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATAGA 54307 | ||||| || || ||||| | | | | | |||| | || || | Sbjct 1009 AAATTCCATTCGTACCTCTAATATACGAATTTTGT-CCTCTTATATCTTGTACTGCTACA 951 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 ||||| || || || ||||| || | || || |||||| || || | || || Sbjct 950 CCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATACCT 891 Query 54368 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||||| ||| |||| | ||| |||||||| ||||||||| | | | ||| Sbjct 890 TCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGTCTAGGAGT 832 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || | ||||||||| || || | ||| || || || |||||| ||| | | || || Sbjct 831 ACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGATA 772 Query 54487 CGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 54545 || || | ||| |||||||| || | ||| || |||| | || | |||||| | Sbjct 771 AGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCATTAATA 713 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 || || |||||||||| || |||||||| || | || || ||| |||| || | Sbjct 712 AATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAATG 653 Query 54606 TTTTAAAACCAAAATA 54621 | ||||| |||||||| Sbjct 652 TCTTAAATCCAAAATA 637 >seq1502 Length=19671 Score = 165 bits (182), Expect = 1e-35 Identities = 227/312 (73%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 ||| || | ||| |||||||||| | ||| || |||| |||||||| || || | || Sbjct 5345 ATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGC 5286 Query 24455 CATTTGAAATCCGTAGAAACATCT-AGCCTCGGTAATCTGTACTTCTATACAAAATCGTT 24513 |||||||| || ||| ||| ||| || || || || |||||| | ||||| | Sbjct 5285 TATTTGAAAAGAATA-AAATTTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATT-TA 5228 Query 24514 CT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 24572 || || |||||||| |||||||| ||||| ||||||||||| || || ||||||||| Sbjct 5227 CTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTT 5168 Query 24573 ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCC 24632 ||||||| |||||| | | ||| ||| | |||| || | ||| | |||| ||| Sbjct 5167 ATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCT 5108 Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 | ||||| ||||||||||||| || ||||| |||||||| | | ||| | ||| || Sbjct 5107 ATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATAAAAGTCCCATACGTCTGGA 5048 Query 24693 TATTGAATTGGA 24704 || ||||||| Sbjct 5047 TACAAAATTGGA 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593667645549600