Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq291 178 9e-40 >seq291 Length=4955 Score = 178 bits (196), Expect = 9e-40 Identities = 292/419 (70%), Gaps = 8/419 (2%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 ||||| ||||| ||||| || |||| ||||||| | || || || | | |||| | Sbjct 4339 TCAATATGATTATTATAAACATGTGCATTTCCTAAAATATGTATGAACTGTGCAGGCTGT 4280 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 |||| | || || || |||||| ||| |||| |||||| ||||| |||||||| Sbjct 4279 AAATTACACACTTGTGCAATCATATGAGTGAATATTGAATAGGAGGCAATATTAAAAGGG 4220 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 || |||| || | |||| ||| |||||||| | ||| || | ||||||||| | Sbjct 4219 ACTCCTAAACCTAAATCACATGACCTTTGATACATAATACATGATAATTTTCCATCAAAA 4160 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| || | || | |||||| || || | ||||||| || |||| ||| Sbjct 4159 ACATAAAATTGGCATAAAATATGACAAGGAGGTAGTGCCATTTGATCAAGATCTTTAACA 4100 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 ||||| ||||||| | ||||||||| ||||| | | | ||| || || || Sbjct 4099 TTCCATGCACACAAAATAATTCTTCTACTAGTTGGATCATTTTTTATTAAATGGATAATA 4040 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTG---TGCTTAAGACCTTG-ATATTC 97406 | |||||||||||||| |||| | |||| ||| ||| || ||| |||||| Sbjct 4039 TTTTTTAATTGATCAACTCCTTTATCTTCATAGTTGGCATGCATA----TTTGTATATTC 3984 Query 97407 TGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTAT 97465 || || |||||||||||||| || ||||| | |||||| | ||| ||||||||| Sbjct 3983 AGCACCGAAATGCCTCCATTGAAAACCATATATAGGTCCTAAGTCATTAACTTCTCTAT 3925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346753273853900