Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq291 286 5e-72 seq1821 149 9e-31 seq5878 140 5e-28 >seq291 Length=4955 Score = 286 bits (316), Expect = 5e-72 Identities = 530/770 (69%), Gaps = 21/770 (3%) Strand=Plus/Minus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 |||| ||| | |||| || |||| ||| | | | ||| ||| |||||| | | | Sbjct 4396 TTTAATTTAAGAGTTGGGAAGGGGTAGGGTATCCTATTTAACTGTACTTTTAAGCTGTCA 4337 Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 ||||||||| ||| | ||||||||| || | | |||| || || | || | |||| Sbjct 4336 ATATGATTATTATAAACATGTGCATTTCCTAAAATATGTATGAACTGTGCAGGCTGTAAA 4277 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||| | ||||||||||||| ||| |||| ||| |||| |||||| || || Sbjct 4276 TTACACACTTGTGCAATCATATGAGTGAATATTGAATAGGAGGCAATATTAAAAGGGACT 4217 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 |||||||| | |||| ||| ||||||||||| ||||| | |||| || || Sbjct 4216 CCTAAACCTAAATCACATGACCTTTGATACATAATACATGATA---ATTTTCCATCAAAA 4160 Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| |||||| ||| ||||||||| |||| |||| | |||| |||| || | Sbjct 4159 ACATAAAATTGGCATAAAATATGACAAGGAGGTAGTGCCATTTGATCAAGATCTTTAACA 4100 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| || || || || ||||| || | |||||||||| || |||||| Sbjct 4099 TTCCATGCACACAAAATAATTCTTCTACTAGTTGGATCATTTTTTATTAAATGGATAATA 4040 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740 | | |||||||||||| ||||| || | ||| || | || ||||| |||||| |||| Sbjct 4039 TTTTTTAATTGATCAACTCCTTTATCTTCATAGTTGGCATGCATATTTGTATATTCAGCA 3980 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTA 205800 || ||||| | ||||||||||||||| | || ||||| ||| ||| |||| | Sbjct 3979 CCGAAATGCCTCCATTGAAAACCATATATAGGTCCTAAGTCATTAACTTCTCTA----TG 3924 Query 205801 AAACCACGtttttttat----atattttaatgatccattttcatcccaaat--atggatt 205854 || | || | |||| | ||| | || ||||||| | ||||| || | ||| Sbjct 3923 GAATAATTTTCTGTTATCCAAAAATTCTCTTGTTCCATTTGCTTCCCATATTCTTACATT 3864 Query 205855 cctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCA 205914 ||||||| | | ||||| ||| ||| ||| ||||||||| | ||| |||||| Sbjct 3863 --TTTATTTAACAAAGTATTTCCATTTGTTTCTCCTCTTATAAACCAAAGTAACTCTTCA 3806 Query 205915 ACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTA 205974 | |||||||| || | | |||||||| ||||||||||| | | || ||| ||| Sbjct 3805 ATTATTCCTCTAAGGAATAATTTCTTTGTTGTTAATAATGGAAAATATTGATTTAAATTA 3746 Query 205975 TATTTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTA 206032 |||||||| | | ||| || | || | ||||||||||||| | ||||| ||| Sbjct 3745 AATTTCATAATATACCCAAATTTACTTAGTACTCCTACACCTGTTCTGTCATTTTGTTTA 3686 Query 206033 TTCTTCCATTAGATAAT-ATTTCTGATATACCTTTTAAATATTGATATTC 206081 | ||||||| ||||| || || ||||| |||||||||||||||| Sbjct 3685 T--TTCCATT-CATAATGATATCATATATAATACTTAAATATTGATATTC 3639 >seq1821 Length=1654 Score = 149 bits (164), Expect = 9e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124565 AGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAA 124624 ||| |||||||||||| | || ||||| || ||||| ||| ||| | || || Sbjct 580 AGGAAAAACTATAACTCTTGATGTTGAACCATCGGATACTATTGAGAATGTTAAGGCTAA 521 Query 124625 AATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACA 124684 ||| ||||| || ||||| || |||||||||||||| || | || ||||| |||||||| Sbjct 520 AATACAAGACAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACA 461 Query 124685 ATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTT 124744 |||||| ||| | ||||||| ||||| || ||||||||||| ||||| | || || Sbjct 460 ATTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCAACCCTACACTT 401 Query 124745 GGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| | ||| |||||||| || ||| || Sbjct 400 AGTTTTAAGATTAAGAGGTGGTTTTTAAATTT 369 >seq5878 Length=5829 Score = 140 bits (154), Expect = 5e-28 Identities = 314/473 (66%), Gaps = 10/473 (2%) Strand=Plus/Minus Query 202738 ATATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATA 202797 ||||||| ||| | | | || |||||| || | | | ||||| | |||| ||||||| Sbjct 3081 ATATTTTGACATATACATGTTAATATCAAAATTTCTTTTGCATCCATTATAATTCATATA 3022 Query 202798 TCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGA 202857 ||||| ||||||||||| || |||||| ||||| | ||||| | ||| ||| || Sbjct 3021 TCTAACTTTACCAAATACTGTTCTTTCATTCCAACTTTGGTCATGTACACCCATAATGGA 2962 Query 202858 CCACATACATCCAACATATCCATTTGGATCACG----TCCATCTATAAAATATTTATCAT 202913 ||||||| | ||||||||||||| | ||| |||||| || | ||| || | Sbjct 2961 CCACATAATTGCAACATATCCATTCG----ACGTTTTTCCATCAATTGCAAATTCCTCGT 2906 Query 202914 TTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTT-TGTCCATTCTAATAttttt 202972 |||| | | || || ||| ||| || ||| | | |||||| Sbjct 2905 TTAATTTTATAGCATATTTTAGAGC-AGTTTTGGAATTTTCTGACCAGTTCAGAATTTTT 2847 Query 202973 ttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGT 203032 || ||||| |||||| ||||| || |||| ||| | || | |||| | |||| ||| Sbjct 2846 TTTGCCCAGTACATTTTTAAAAATTCATGAATTATTCCTTCATTAATTAATTGTAATTGA 2787 Query 203033 GATGCATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATA 203092 | |||||||| || | || || ||||||| || | | || |||| Sbjct 2786 CAACAATTCCATATATCATTGTGTGTCTTCGCATTTTTAAAATCGTCGTAATCGTATAGG 2727 Query 203093 TGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCA 203152 |||| ||| ||||| | ||||| |||| ||| | ||||||| | || | ||| Sbjct 2726 TGTTCTCTTTTATCAGCATCATGTTTTTTTAAACTTTCTTTTGCCCATTCCTTTCCCCCA 2667 Query 203153 TTTATATTATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTT 203205 || | |||||| ||||||| ||| ||||||||| |||| ||| ||| || || Sbjct 2666 TTAAAATTATCATAATTTTTATTGTAATAACAATAATTGTCAGCTAGCTCCTT 2614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755387347936000