Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1502 306 3e-78 >seq1502 Length=19671 Score = 306 bits (338), Expect = 3e-78 Identities = 633/921 (69%), Gaps = 27/921 (3%) Strand=Plus/Minus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||| ||||||| | | ||||||||||| | ||||||| | | || ||| || | | Sbjct 5956 CTTCAAAAATCGGTGTTGAGAGAAAACACTTGATCTTTTCTCTGTGCCATTACACCCGAT 5897 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || ||||| || |||||| ||||| || |||||||||||||||| | || || Sbjct 5896 TTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGAGATATCAAA 5837 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAAC 16060 ||||| ||| |||||||||||||||| || || ||| |||||| || ||| ||| Sbjct 5836 TCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCTAAACATTCTAAC 5777 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 ||| ||||| ||||||||||| || || ||| |||||| | ||||||||||| Sbjct 5776 AAT---CTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCATTCCTATC 5720 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || | | ||| | | ||| || ||| | ||||| | || ||||| | | Sbjct 5719 AAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTGCTTCTTTTACA 5660 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAATA---AGT-GTTTAAACATTATACA 16236 |||| ||| | ||| | | | || |||| | || | || | |||| ||| Sbjct 5659 ATAT-TCTGA--ACAATTTCTTCTGGTAA-TTTATTTTCCAGCAGACTATATATTAAACA 5604 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||| || ||| |||||||| || ||||| ||||| || || ||| || || || Sbjct 5603 GTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCC 5544 Query 16297 -TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 || ||| | | ||||||||| ||| || ||||| ||| |||| ||| |||| Sbjct 5543 ATGTAATTTATTTT-GTTTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAATA 5485 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttcta 16415 ||||||| || ||| ||| || | || || | | | ||| || | | | Sbjct 5484 TACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGA---ATTGGTATTATTAA 5428 Query 16416 tccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTA 16474 ||||||| |||||| ||||| | ||||||| | | | || || |||||||| | | Sbjct 5427 TCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGT-ATATTTTCTATTGCGTGA 5369 Query 16475 AATAAATA-AtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 ||||||| | | | |||| | ||| |||||| |||| || | ||||| || | Sbjct 5368 AATAAATTTAATCGCTCCTTTTC-ATCCTTTATATAATTATCAATCAACAAACTGTAAGT 5310 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 |||||||||||||||||||| |||||| |||||| |||||| ||||||| | ||| Sbjct 5309 TTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTCCGTTAT 5250 Query 16594 TTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 ||| ||||| ||||| || || || || ||||| |||||||||||| || |||| Sbjct 5249 TTGAACTTC-TCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTG 5191 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTTTTAACCAG 16711 ||||||| || | | ||||| ||||||| |||||| || || | || |||| | | Sbjct 5190 CAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCA-AAA 5132 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTT 16771 || ||||| |||||||||| | ||||||| | |||||||| ||||| | || ||| Sbjct 5131 TCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTT 5072 Query 16772 TTATACATTTTCCATATGTCT 16792 ||||| | | ||||| |||| Sbjct 5071 TTATAAAAGTCCCATACGTCT 5051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462469969222000