Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1502 183 3e-41 >seq1502 Length=19671 Score = 183 bits (202), Expect = 3e-41 Identities = 582/888 (66%), Gaps = 27/888 (3%) Strand=Plus/Minus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 || || ||| ||| ||||| || |||||||||||| || || || ||||| |||| Sbjct 5908 ATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGA 5849 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCT 14020 || ||||| ||||| ||| ||| |||||| |||| ||| ||||| || ||| Sbjct 5848 AGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCT 5789 Query 14021 AG---TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 | |||||| | ||||||| || | || ||||| ||||| |||||||| || Sbjct 5788 AAACATTCTAACA---ATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAA 5732 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGT-TAAAAATTCTTTTTCTATAGACAC 14136 ||||| ||||| | | ||| | | ||| || |||| | ||||| || Sbjct 5731 TTCATTCCTATCAAGTCACAAGGTAA-AGATTCACATATAAATGATCGTTCTACTTCTAC 5673 Query 14137 AGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT--AGATGTTTA 14194 || || |||| |||| || || |||||| | | | | |||||| || | || Sbjct 5672 TGCTTCTTTTACAATATTCTGAACAATTTCTTCTG--GTAATTTATTTTCCAGCAGACTA 5615 Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254 | |||||||| ||| || ||| | || |||||||||||||| | ||| || | Sbjct 5614 TATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTA 5555 Query 14255 AATGTTAATCC-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 14313 || |||| || || || || | ||||||| ||||| || || ||| || || Sbjct 5554 AAAGTTAGCCCATGTAATTTATTTT-GTTTTTTAAACCAGAAAATAGCACAAAAACTACC 5496 Query 14314 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14373 ||| ||||| || || || ||| |||| || |||||| |||| || | Sbjct 5495 ACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGGT 5436 Query 14374 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14433 || || |||||||| |||||| || ||| ||||||| | || |||| Sbjct 5435 ATTATTA---ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTC 5379 Query 14434 AATAGCATTAAATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14491 || || | |||||||| | || || ||| | ||| | || || ||||||| | Sbjct 5378 TATTGCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATA-AT-TATCAATCAAC 5321 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 || || || |||| || || || || |||| ||||| |||||| |||||| || Sbjct 5320 AAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTA 5261 Query 14552 GCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 ||||| | ||| || ||| ||||| | ||||||||||| |||||| ||| Sbjct 5260 GCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCA 5201 Query 14612 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC---TTCATTGCTG 14668 ||||| |||||||||||||| || | | ||| ||||| | || || |||||| Sbjct 5200 TCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTT--- 5144 Query 14669 AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14728 | ||||| |||| ||||| | || | ||||| || || |||||||||| | Sbjct 5143 AATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAA 5084 Query 14729 GCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14776 || | ||||||||||| | |||||| ||| ||| || || ||| Sbjct 5083 GCTTCTGCTTTTTTATAAAAGTCCCATACGTCTGGATACAAAATTGGA 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482301766843600