Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1378 356 3e-93 seq1502 161 1e-34 >seq1378 Length=4202 Score = 356 bits (394), Expect = 3e-93 Identities = 1107/1699 (65%), Gaps = 40/1699 (2%) Strand=Plus/Minus Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 || ||||| || |||||| || |||||||| | || || |||||||| |||||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 62247 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGAT 62303 || | ||||| || | | ||| | ||| | || | | || ||| ||| | | Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 2202 Query 62304 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62363 ||| || | || | | | || || || || | |||||| || ||| || | Sbjct 2201 CCATTATGCGCAATTAACTGCTGTTTCATATCTTCGTCCCATAAGCCCCTATCGAATAGA 2142 Query 62364 ACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAA 62423 || | | | ||| |||||||| || ||||||||| ||| ||||| | | ||| Sbjct 2141 TCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAA 2082 Query 62424 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62483 || ||||| ||||| ||||| | || || ||||| || | ||||||| || || ||| Sbjct 2081 ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCA 2022 Query 62484 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62543 || ||||||||||| | | |||| ||| || | ||| | | | | ||||| ||| Sbjct 2021 GTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTT 1962 Query 62544 AGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATAT-----TGTA 62598 || | ||||||||||| | | || | | | |||| |||| Sbjct 1961 AGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTA 1904 Query 62599 GAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCT 62657 ||||||| | ||| || | || | ||| ||| | ||||| ||||| | || ||| Sbjct 1903 GAATACCTTGACTAGCTGGACTACCCTG-ATAAGATTCATAAGGTCCATGAATCATTGCT 1845 Query 62658 AGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGAT-CTTCTTATTTAG 62716 | || | | ||||| ||| | || || |||||||| || || ||||| ||| | Sbjct 1844 AATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-ATTCAA 1786 Query 62717 ATCTTGTGCTTC--CGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62774 |||| ||||| | | || || | ||||| | || || ||||| | || ||||| Sbjct 1785 CTCTTTAGCTTCATCCGACT--CATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAAC 1728 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 || |||||||| ||||| ||||||||||| ||||| ||||| | || |||||| |||| Sbjct 1727 CCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATA 1668 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 || |||||||| | || || ||||||| |||||||| ||| | ||| | || Sbjct 1667 GGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCA 1608 Query 62895 TTCAGTTTGAGAAAATCAAATCGCCCATCTATT--------ACAAACATGTTCAATGCAA 62946 | | ||| ||||| |||| | | | || ||||| || || |||| Sbjct 1607 TATAATTTTTTAAAATTAAAT--TCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAA 1550 Query 62947 CAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 63006 ||| || |||||||| || || || |||| || | ||| | || || ||| | Sbjct 1549 TAGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAAC 1490 Query 63007 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63066 | | ||||||||| |||||||| |||| ||||| |||||| || ||||| | | Sbjct 1489 ACAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGT 1430 Query 63067 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63126 | ||||| | || ||||| ||| |||||||| ||| || || || || ||| | Sbjct 1429 CTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATA 1370 Query 63127 CGACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGAGTATACA 63183 || | || || || || ||| | | | ||||| ||| || | ||| | Sbjct 1369 AATCTTGTGC---TAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATA 1313 Query 63184 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCA 63243 || ||| || || || ||||| | | || || ||||||| |||||||| | Sbjct 1312 ATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTA 1253 Query 63244 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63303 | | ||| | | | || || |||| |||||| || | ||||||| ||||| ||| Sbjct 1252 AAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCAT 1193 Query 63304 TAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63363 ||| | |||||||| ||| ||| || || || ||| ||| | | ||| | || Sbjct 1192 AAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATT 1133 Query 63364 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63423 | | ||||| |||||||| ||||| | || | || | | || | ||| || Sbjct 1132 CGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTC 1073 Query 63424 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63483 |||| ||||||| |||||||| || | |||| ||||||| ||||| || | | || | Sbjct 1072 CTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCAT 1013 Query 63484 TTGATATACCATTGGTACCGGAGATATA-GCCTCCACTGGCACGAATATTACTAATTGAT 63542 |||| || ||||| ||||| ||||| | | | | | |||| | || | Sbjct 1012 TTGAAATTCCATTCGTACCTCTAATATACGAATTTTGT-CCTCTTATATCTTGTACTGCT 954 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | |||||| || || || ||||| || | || || |||||| || || | || Sbjct 953 ACACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATA 894 Query 63603 CCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 |||||||| ||| |||| | ||| |||||||| ||||||||| | | || Sbjct 893 CCTTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGTCTAGG 835 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || | ||||||||| || || | ||| || || || |||||| ||| | | || Sbjct 834 AGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATG 775 Query 63722 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63780 || || || | ||| |||||||| || | ||| || |||| | || | ||||| Sbjct 774 ATAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCATTA 716 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 | | || || |||||||||| |||||||||||| || || || || ||| |||| | Sbjct 715 ATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTA 656 Query 63841 AAGTTTTAAAACCAAAATA 63859 | || ||||| |||||||| Sbjct 655 ATGTCTTAAATCCAAAATA 637 >seq1502 Length=19671 Score = 161 bits (178), Expect = 1e-34 Identities = 270/385 (70%), Gaps = 4/385 (1%) Strand=Plus/Minus Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| || |||||| || || ||||| ||| || || ||||||| || | | Sbjct 5428 ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGA 5369 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || | || | || || ||| || | |||| |||| ||||| | ||| || || Sbjct 5368 AATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTT 5309 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT-AGCCTCGGTAAT 33937 || |||||||| || || | || || ||||| || ||| ||| ||| || || || Sbjct 5308 TCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATA-AAATTTCTTAGCTTCCGTTAT 5250 Query 33938 CTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 || |||||| | ||||| | || || |||||||| |||||||||||||| |||| Sbjct 5249 TTGAACTTCTCTTAAAAATT-TACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTG 5191 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 34056 ||||||| || || |||||||||||||||| |||||| | | ||| ||| | ||| Sbjct 5190 CAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAAT 5131 Query 34057 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 34116 | || | ||| | |||| ||| | ||||| ||||||||||||| || ||||| |||| Sbjct 5130 CTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTT 5071 Query 34117 TATACATATTCCAGATGTCATGATA 34141 |||| | | ||| | ||| |||| Sbjct 5070 TATAAAAGTCCCATACGTCTGGATA 5046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629760365325600