Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1378 594 5e-165 seq1502 235 5e-57 >seq1378 Length=4202 Score = 594 bits (658), Expect = 5e-165 Identities = 1058/1526 (69%), Gaps = 41/1526 (3%) Strand=Plus/Minus Query 37110 TAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGT 37169 ||| ||| | || | || || || || || ||| |||||| || |||||||| Sbjct 2145 TAGATCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATA 2086 Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||| || || |||||||| ||||||| ||| || ||||| | | ||||||||||||||| Sbjct 2085 ATAAATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGA 2026 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 ||||| ||||| ||||| | ||| | ||| || || |||||| || ||| | Sbjct 2025 AGCAGTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAG 1966 Query 37290 TTTTAGTTCATTCCAATCCCATAAAT--CTGTTGGGTTCTTTAA-CCACATATCATATTG 37346 |||||||||| ||||| ||| | | || | | |||| |||||||||| |||| Sbjct 1965 CTTTAGTTCATCCCAATTCCAGTACTTACTATCTACCTTTTTATTCCACATATCAAATTG 1906 Query 37347 TAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGC 37406 ||||||||||| ||| |||||| | | | ||| | ||||||||||| | ||| | || Sbjct 1905 TAGAATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAATCATTGC 1846 Query 37407 TAGTTCGCAACTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 || ||| || |||| ||||| || ||||| || || |||||||| ||| | |||| Sbjct 1845 TAATTC-CA--TAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCTATT 1789 Query 37464 TAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAA 37523 || ||| ||||| || || | | ||| | ||| | ||||| ||| || || Sbjct 1788 CAACTCTTTAGCTTCATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAA 1729 Query 37524 ACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCAC 37583 ||||||||||| |||||||| |||||||| |||| ||||| | |||| | | Sbjct 1728 CCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAAT 1669 Query 37584 TGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTAT 37643 || |||||||| | || |||||||||| ||||||| || | ||||| |||||| Sbjct 1668 AGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTC 1609 Query 37644 TCTCAACTTGTCGAACATAAATACGTTATTATTAA------CAAATTTACTCAACGAAAT 37697 || || | || ||||| | || || | | ||||||| | || | ||| Sbjct 1608 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAAT 1549 Query 37698 AGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACA 37757 ||| | ||||||||||||||||||||||| | || | | ||||| || ||| Sbjct 1548 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1489 Query 37758 GAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATC 37817 | |||||| || | || || || | ||| ||||||| ||||| |||||| || || Sbjct 1488 CAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTC 1429 Query 37818 TTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAA 37877 |||||||| ||||| || ||| ||| |||||| | | |||| |||||| Sbjct 1428 TTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 1369 Query 37878 ACTTCTTGCTTTAACGATCGCTTTAAt-----ttttttCTTTGTTTCGTATTCTATATAT 37932 | ||||| ||| | | ||| | | ||||||| ||| || | | |||| Sbjct 1368 A--TCTTGTGCTAAT-ACAGTTTTTTTGCCCATATTTTCTTC--TTCATACTTAACATAT 1314 Query 37933 AATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATT 37992 ||||| | ||| || | |||||| || | || |||||| ||||| |||||||||| Sbjct 1313 AATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATT 1254 Query 37993 AGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCA 38052 | || ||| | || || || || ||| | || ||| || || ||||| ||||| | ||| Sbjct 1253 AAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCA 1194 Query 38053 GTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAA 38112 ||| |||||| | | ||| ||||||| || || ||| |||||||| || ||| Sbjct 1193 TAAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAAT 1134 Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172 ||||||||||| | ||||||||||| ||||||| | | | ||| |||||| | Sbjct 1133 TCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCT 1074 Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 ||||| |||| | ||||||| |||| | |||| | | ||||||||||||||| | ||| Sbjct 1073 CCTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCA 1014 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATAT----TACTTAT 38288 || || | || || |||| ||||| | | | ||| ||||| |||| Sbjct 1013 TTTGAAATTCCATTCGTACCTCTAATATACGAATTTTGTCCTCTTATATCTTGTACT--G 956 Query 38289 CGACAATCCTATTCCACCTGCATGTTTTGATATTAA-AGCGCATTGTTTTAACGTATCAA 38347 | ||| ||||| ||||| || |||||| || ||| ||| || ||||||| || || | Sbjct 955 CTACA--CCTATACCACCAGC-TGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGA 899 Query 38348 ATATACCTTCTAT--ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGG 38405 ||||||||||||| | | | || || || | || | ||||||| |||||||| || Sbjct 898 ATATACCTTCTATTGAATCTGAT--TTCATAGATAAAAGAAAACAAGACGACATTTGGGG 841 Query 38406 CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAA 38465 ||||| || | ||||||||||| || | ||||| |||| |||||| |||| Sbjct 840 TCTAGGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACAT 781 Query 38466 ATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCT 38525 ||| ||| ||||||| | | | |||||||||| | || ||||||| ||||| || Sbjct 780 CAAATGATAAGTTTCTAATGCTTTATCTATATCATCAATATGTATACCTATCGATACTCT 721 Query 38526 CATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT-CTGTTTAAGTAGATACGATT 38584 ||||| | ||||||||||||||| || ||||| || || | ||| || ||| ||| Sbjct 720 CATTAATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAA-TAAATAAGATC 662 Query 38585 TTTCTAATGTTTTTATTCCAAAATAA 38610 |||||||||| || | |||||||||| Sbjct 661 TTTCTAATGTCTTAAATCCAAAATAA 636 >seq1502 Length=19671 Score = 235 bits (260), Expect = 5e-57 Identities = 560/835 (67%), Gaps = 10/835 (1%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| || ||||| | |||||||||||| || || |||| || ||||| | Sbjct 5896 TTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGAGATATCAAA 5837 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | |||||||||| | | || ||||||||| || ||||| | ||| Sbjct 5836 TCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCTAAACATTCTAAC 5777 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||||| || || || |||||||| | ||||||| ||||| | Sbjct 5776 AATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCATTCCTATCAAG 5717 Query 11519 TCCACCGGAATAGCAACTGTCAAA-AACTCCTT-TTCTATATTAACCGCATCAATGATTA 11576 || || | || | | || | || | | ||||| | || || || | | | Sbjct 5716 TCACAAGGTAAAG--ATTCACATATAAATGATCGTTCTACTTCTACTGCTTCTTTTACAA 5659 Query 11577 TCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAA 11636 | | | || ||| | | | | || | | | || | |||||||| || Sbjct 5658 TATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACTATATATTAAACAGTTAA 5599 Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696 | || |||||| ||||| |||||||| |||| ||||||| ||| |||| || | | Sbjct 5598 AGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCATGTA 5539 Query 11697 -TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCC 11755 | || | ||||||| | ||| || |||||| ||| |||| ||| ||||| || Sbjct 5538 ATTTATTTT-GTTTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAATATACCT 5480 Query 11756 TCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTTT 11815 || ||| |||| |||||||| | |||| || | ||| | || |||||||| Sbjct 5479 TCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGGTATTATTAATCCATTTG 5420 Query 11816 CTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGC 11875 ||||| |||||| ||||| || | || ||||||| |||| |||||||| Sbjct 5419 GCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGAAATAAATTT 5360 Query 11876 ATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGA 11935 | | || | | ||| ||| ||| |||| || || ||||| || ||||||||||| Sbjct 5359 AATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGA 5300 Query 11936 ATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGT-GCCTCTGAACACTGTACATC 11994 ||||| |||| ||||||||||| ||| ||| || | || || | || || | Sbjct 5299 ATATTCTCCACTGCTATTTGAAAAGAATA-AAATTTCTTAGCTTCCGTTATTTGAAC-TT 5242 Query 11995 CACATAAAATCTTTC-CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053 | | ||||| || | || ||||| || || || |||||||| | ||||||||||| Sbjct 5241 CTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATG 5182 Query 12054 CTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAAT 12113 ||| | |||||||||||| | |||||| | || | ||||||| || |||| | |||| Sbjct 5181 CTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAAT 5122 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATA 12168 | |||||||||||| ||||| | |||||||| || ||| || |||||| Sbjct 5121 CGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATA 5067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468482222808800