Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1378 331 1e-85 seq1502 170 3e-37 >seq1378 Length=4202 Score = 331 bits (366), Expect = 1e-85 Identities = 1102/1701 (65%), Gaps = 44/1701 (3%) Strand=Plus/Minus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 || ||||| || |||||| || |||||||| | || || |||||||| |||||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGAT 65096 || | ||||| || | | ||| | ||| | || | | || ||| ||| | | Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 2202 Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 ||| || || || | | | || || || || | |||||| || ||| || | Sbjct 2201 CCATTATGCGCAATTAACTGCTGTTTCATATCTTCGTCCCATAAGCCCCTATCGAATAGA 2142 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216 || | | | ||| || ||||| || |||||||||| ||| ||||| | | ||| Sbjct 2141 TCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAA 2082 Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276 || ||||| ||||| ||||| | || || ||||| || | ||||||| || || ||| Sbjct 2081 ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCA 2022 Query 65277 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 65336 || ||||||||||| | | |||| ||| || | ||| | | | | ||||| ||| Sbjct 2021 GTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTT 1962 Query 65337 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT-----TGTA 65391 || ||||||||||| | | || | | | | |||| Sbjct 1961 AGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTA 1904 Query 65392 GAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 65450 ||||||| | ||| || | || | ||| ||| | || || ||||| | || ||| Sbjct 1903 GAATACCTTGACTAGCTGGACTACCCTG-ATAAGATTCATAAGGTCCATGAATCATTGCT 1845 Query 65451 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAG 65509 | ||| | | ||||| ||| | || || ||||||||||| || ||||| ||| | Sbjct 1844 AATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-ATTCAA 1786 Query 65510 ATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 65568 |||| ||||| | | | ||| | ||||| | || || ||||| | |||||||| | Sbjct 1785 CTCTTTAGCTTC-ATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACC 1727 Query 65569 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 65628 | |||||||| ||||| ||||||||||| ||||| ||||| | || |||||| ||||| Sbjct 1726 CCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAG 1667 Query 65629 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 65688 | |||||||| | || || ||||||| |||||||| ||| | ||| | || | Sbjct 1666 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1607 Query 65689 TCAGTTTGAGAAAATCAAATCGCTCATCTATT---------ACAAACATGTTCAATGCAA 65739 | ||| ||||| |||| || | | || ||||| || || |||| Sbjct 1606 ATAATTTTTTAAAATTAAAT---TCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAA 1550 Query 65740 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 65799 ||| || |||||||| || || || |||| || | ||| | || || ||| | Sbjct 1549 TAGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAAC 1490 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | | ||||||||| ||||| || |||| ||||| |||||| || ||||| | | Sbjct 1489 ACAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGT 1430 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 | ||||| | || ||||| ||| |||||||| ||| || || || || ||| | Sbjct 1429 CTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATA 1370 Query 65920 CGACTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACA 65976 || | || || || || ||| | | | |||||| ||| || ||| | Sbjct 1369 AATCTTGTGC---TAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATA 1313 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 || ||| || || || ||||| | | ||| || ||||||| |||||||| | Sbjct 1312 ATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTA 1253 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 | | ||| | | | || || |||| |||||| || | ||||||| ||||| ||| Sbjct 1252 AAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCAT 1193 Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156 ||| |||||||| | ||| ||| || || || ||| ||| | | ||| | || Sbjct 1192 AAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATT 1133 Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216 | | ||||| ||||||| ||||| | || | || | | || | ||| || Sbjct 1132 CGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTC 1073 Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276 |||| ||||||| |||||||| || | |||| ||||||| ||||| || | | |||| Sbjct 1072 CTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCAT 1013 Query 66277 TGGATGTACCATTGGTCCCGGAGATATA-GCTTCCACTTG--CACGAATATTACTAATTG 66333 | || | ||||| || || ||||| | | ||| | | |||| | || Sbjct 1012 TTGAAATTCCATTCGTACCTCTAATATACGAAT---TTTGTCCTCTTATATCTTGTACTG 956 Query 66334 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 66393 || |||||| || || || ||||| || | || || |||||| || || | | Sbjct 955 CTACACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATA 896 Query 66394 TGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 66452 | || ||||| ||| |||| | ||| |||||||| ||||||||| | | | Sbjct 895 TACCTTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGTCTA 837 Query 66453 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 66512 ||| || | ||||||||| || || | ||| || || || |||||| ||| | | | Sbjct 836 GGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAA 777 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCAT 66571 | || || || | ||| |||||||| || | ||| || |||| | || | ||| Sbjct 776 TGATAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCAT 718 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 ||| | || || |||||||||| || |||||||| || || || || ||| |||| Sbjct 717 TAATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTC 658 Query 66632 CAAAGTTTTAAAACCAAAATA 66652 || || ||||| |||||||| Sbjct 657 TAATGTCTTAAATCCAAAATA 637 >seq1502 Length=19671 Score = 170 bits (188), Expect = 3e-37 Identities = 228/312 (73%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 ||| || | ||| |||||||||| | ||| || |||| |||||||| || || | || Sbjct 5345 ATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGC 5286 Query 36478 CATTTGAAATCCGTAGAAACATCT-AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 36536 |||||||| || ||| ||| ||| || || || || |||||| | ||||| | Sbjct 5285 TATTTGAAAAGAATA-AAATTTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATT-TA 5228 Query 36537 CT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 36595 || || |||||||| |||||||| ||||| ||||||||||| || || ||||||||| Sbjct 5227 CTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTT 5168 Query 36596 ATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCC 36655 ||||||| |||||| ||| ||| ||| | |||| || | ||| | |||| ||| Sbjct 5167 ATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCT 5108 Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 | ||||| ||||||||||||| || ||||| |||||||| | | ||| | ||| || Sbjct 5107 ATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATAAAAGTCCCATACGTCTGGA 5048 Query 36716 TATTGAATTGGA 36727 || ||||||| Sbjct 5047 TACAAAATTGGA 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658112988546800