Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1378 383 2e-101 seq1502 176 6e-39 >seq1378 Length=4202 Score = 383 bits (424), Expect = 2e-101 Identities = 1115/1698 (66%), Gaps = 38/1698 (2%) Strand=Plus/Minus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 || ||||| || |||||| || |||||||| | || || |||||||| |||||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 78919 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGAT 78975 || | ||||| || | | ||| | ||| | || | | || ||| ||| | | Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 2202 Query 78976 CCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 79035 ||| || || || | | | || || ||||| | |||||| || ||| || | Sbjct 2201 CCATTATGCGCAATTAACTGCTGTTTCATATCTTCGTCCCATAAGCCCCTATCGAATAGA 2142 Query 79036 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 79095 || | | | ||| || ||||| || |||||||||| ||| ||||| | | ||| Sbjct 2141 TCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAA 2082 Query 79096 ATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCC 79155 || ||||| ||||| ||||| | ||||| ||||| || | ||||||| || || || Sbjct 2081 ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCA 2022 Query 79156 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTT 79215 |||||||||||||| | | |||| ||| || | ||| | | | ||||| ||| Sbjct 2021 GTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTT 1962 Query 79216 AGAGATTCCCAATCCCAAAGATCAGACGGGACAAC-----ATTCCAAAGATCATATTGTA 79270 || ||||||| ||| | | || | | |||||| | |||| |||||| Sbjct 1961 AGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTA 1904 Query 79271 GAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCT 79329 ||||||| | |||||| | | | |||| || | |||||||||||| | | ||| Sbjct 1903 GAATACCTTGACTAGCTGGACTACCCTGA-TAAGATTCATAAGGTCCATGAATCATTGCT 1845 Query 79330 AATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAAT-CTTCTTATTGAG 79388 ||||| | | ||||| || | || || ||||||||||| || ||||| ||| | Sbjct 1844 AATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-ATTCAA 1786 Query 79389 ATCTTGTGCTTCTAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 79447 |||| ||||| | | | ||| | ||||| | || || ||||| | |||||||| | Sbjct 1785 CTCTTTAGCTTC-ATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACC 1727 Query 79448 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAG 79507 | |||||||| ||||| ||||||||||| ||||| ||||| | || |||||| ||||| Sbjct 1726 CCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAG 1667 Query 79508 GATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCT 79567 | |||||||| | || || ||||||| ||||| || || | ||| | || | Sbjct 1666 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1607 Query 79568 TTAGTTTGAGAAAATCAAATCGTCCATCTATT--------ACAAACATGTTCAACGCGAC 79619 || ||| ||||| |||| || | | || ||||| || || || | Sbjct 1606 ATAATTTTTTAAAATTAAAT--TCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAAT 1549 Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 ||| || |||||||| || || || |||| || | ||| | || |||||| || Sbjct 1548 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1489 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 | |||||||| || || || |||| ||||| |||||| || ||||| | || Sbjct 1488 CAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTC 1429 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||||| | || | ||| ||| |||||||| ||| || || || || ||| | Sbjct 1428 TTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 1369 Query 79800 GACTCGAGCCTTTATTATAGACTTGTATC---TCTTTTCTCTTTCGTATTGTGTATATAA 79856 || | || || || || || | | | |||||| ||| || | |||||| Sbjct 1368 ATCTTGTGC---TAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATAA 1312 Query 79857 TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAA 79916 | ||| || || || ||||| || || ||| || ||||| | |||||||| || Sbjct 1311 TTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTAA 1252 Query 79917 CGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976 | ||| | | || || ||||||| |||||| || | ||||||| ||||| ||| Sbjct 1251 AGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATA 1192 Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 ||| | |||||| | ||| || || || || ||| ||| | | ||| | || | Sbjct 1191 AAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTC 1132 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | ||||| |||||||| ||||| | || | || | | || || ||| ||| Sbjct 1131 GAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCC 1072 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 ||| ||||||| |||||||| || | |||| ||||||| ||||| || | | ||||| Sbjct 1071 TCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCATT 1012 Query 80157 GGATGTACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATA 80215 || | ||||| || || ||||| | | | | | |||| | || || Sbjct 1011 TGAAATTCCATTCGTACCTCTAATATACGAATTTTGT-CCTCTTATATCTTGTACTGCTA 953 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 |||||| || || || ||||| || | || || |||||| || || | || | Sbjct 952 CACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATAC 893 Query 80276 CCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 | ||||| ||| |||| | ||| |||||||| ||||||||| | | | | Sbjct 892 CTTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGTCTAGGA 834 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || | ||||||||| || || | ||| || || || |||||| ||||| | || Sbjct 833 GTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGA 774 Query 80395 TACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || || | ||| |||||||| || | ||| || |||| || || | |||||| Sbjct 773 TAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCATTAA 715 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 | || || |||||||||| || ||||| || || || || |||||| |||| || Sbjct 714 TAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAA 655 Query 80514 AGTTTTAAAACCAAAATA 80531 || ||||| |||||||| Sbjct 654 TGTCTTAAATCCAAAATA 637 >seq1502 Length=19671 Score = 176 bits (194), Expect = 6e-39 Identities = 577/884 (65%), Gaps = 21/884 (2%) Strand=Plus/Minus Query 49647 TTCT-TGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAG 49705 |||| || | ||| || ||| ||| || || || | || | ||||||||||||||| | Sbjct 5919 TTCTCTGTGCCATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTG 5860 Query 49706 TTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttt 49765 ||||||||| | ||||| ||||| ||| ||| ||||| | || | | | || Sbjct 5859 TTTTTCCTTGAAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTT 5800 Query 49766 ttttAAATCCCAA---TTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCA 49822 || |||| || ||| | ||||||||| || |||||||| || ||| | || Sbjct 5799 TTGAGCATCCTAAACATTCTAA---CAATCTATCAGCCACAAATTCAATGTATTGTGACA 5743 Query 49823 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTT 49882 | | | ||||||||||||| | | | || | || || | |||| | ||| Sbjct 5742 TTAATCTTGAATTCATTCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTT 5683 Query 49883 CAATGGATACCGCATCTGTTATAATAGATCT-AACGGTTTCTTCACTCGGTGGATGCAAT 49941 | | ||| || ||| ||| |||| ||| ||| ||||||| ||| || | | Sbjct 5682 CTACTTCTACTGCTTCTTTTACAATAT-TCTGAACAATTTCTTCT---GGTA-ATTTATT 5628 Query 49942 ----AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAAT 49997 | | || | || ||||| || || || | || || ||||||||||| Sbjct 5627 TTCCAGCAGACTATATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAAT 5568 Query 49998 TAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG- 50056 || ||| || ||| || || || | | | | ||||||| ||| || || | Sbjct 5567 TAATTCATTACTAAAAGTTAGCCCATGTAATTTATTTTGTTTTTTAAACCAGAAAATAGC 5508 Query 50057 ACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTC 50116 || ||| ||| | ||| || || |||||||| ||| || || | | ||| Sbjct 5507 ACAAAAACTACC-ACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTG 5449 Query 50117 CATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 50176 || || | | | || ||||| || |||||| || || ||||| ||| | Sbjct 5448 CAAAAGAATTGGTATTATTAATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTG 5389 Query 50177 GCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTAT 50236 | || ||||||| || | ||| | || | || || ||| || | |||| ||| Sbjct 5388 GTATATTTTCTATTGCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTAT 5329 Query 50237 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 50296 | ||||| | ||| || |||| |||||||| || || | || || ||||| || | Sbjct 5328 CAATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATA-A 5270 Query 50297 AACATCT-AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTC 50355 || ||| ||| || || || || |||||| | ||||| ||| |||||||| Sbjct 5269 AATTTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAA 5210 Query 50356 ACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG 50415 |||||||| ||||| ||||||||||| || || ||||||||||||||||||||||| || Sbjct 5209 ACTATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTT 5150 Query 50416 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAA 50475 ||| ||| | |||| || | ||| | |||| ||||| ||||| |||||||| Sbjct 5149 TCATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAA 5090 Query 50476 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 50519 ||||| || ||||| |||||||| | | ||| | ||| |||| Sbjct 5089 AATGAAGCTTCTGCTTTTTTATAAAAGTCCCATACGTCTGGATA 5046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718203527322800