Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1502 199 4e-46 >seq1502 Length=19671 Score = 199 bits (220), Expect = 4e-46 Identities = 583/885 (66%), Gaps = 21/885 (2%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || || ||| ||| ||||| || |||||||||||| || || || ||||| |||| Sbjct 5908 ATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGA 5849 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCT 13688 || ||||| ||||| ||| ||| |||||| |||| ||| ||||| || ||| Sbjct 5848 AGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCT 5789 Query 13689 AG---TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 | |||||| | |||||||||| | ||| ||||| ||||| |||||||| || Sbjct 5788 AAACATTCTAACA---ATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAA 5732 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGT-TAAAAATTCTTTTTCTATAGACAC 13804 ||||| ||||| | | ||| | | ||| || |||| | ||||| || Sbjct 5731 TTCATTCCTATCAAGTCACAAGGTAA-AGATTCACATATAAATGATCGTTCTACTTCTAC 5673 Query 13805 AGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTA 13862 || ||||||| |||| | || ||| || | | | | |||||| || | || Sbjct 5672 TGCTTCTTTTACAATATTCTGAACAATTTCTTCTG--GTAATTTATTTTCCAGCAGACTA 5615 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 | |||||||| ||| || ||| | || |||||||||||||| | ||| || | Sbjct 5614 TATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTA 5555 Query 13923 AATGTTAATCC-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 || |||| || || || || | ||||||| ||||| || || ||| ||| || Sbjct 5554 AAAGTTAGCCCATGTAATTTATTTT-GTTTTTTAAACCAGAAAATAGCACAAAAACTACC 5496 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 ||| ||||| || || || ||| |||| || |||||| |||| || | Sbjct 5495 ACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGGT 5436 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 || || |||||||| |||||| || ||| ||||||| | || |||| Sbjct 5435 ATTATTA---ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTC 5379 Query 14102 AATAGCATTAAATAAATAT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159 || || | |||||||| | || || ||| | ||| | || || ||||||| | Sbjct 5378 TATTGCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATA-AT-TATCAATCAAC 5321 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 || || || |||| || || || || |||| ||||| |||||| |||||| || Sbjct 5320 AAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTA 5261 Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 ||||||| ||| ||||| ||||| | ||||||||||| |||||| ||| Sbjct 5260 GCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCA 5201 Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339 ||||| |||||||||||||| || | | ||| ||||| | || || | | || | | Sbjct 5200 TCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAAT 5141 Query 14340 TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14399 |||| |||| ||||| | || | ||||| || || |||||||||| ||| Sbjct 5140 TTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCT 5081 Query 14400 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14444 | ||||||||||| | |||||| ||| ||| || || ||| Sbjct 5080 TCTGCTTTTTTATAAAAGTCCCATACGTCTGGATACAAAATTGGA 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479684404718000