Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1502 190 2e-43 >seq1502 Length=19671 Score = 190 bits (210), Expect = 2e-43 Identities = 582/885 (66%), Gaps = 21/885 (2%) Strand=Plus/Minus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 || || ||| ||| ||||| || |||||||||||| ||||| || ||||| |||| Sbjct 5908 ATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGA 5849 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCT 13476 || ||||| ||||| ||| || |||||| |||| ||| ||||| || ||| Sbjct 5848 AGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCT 5789 Query 13477 AGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13536 | | ||| ||||||||||| | ||| ||||| ||||| |||||||| ||||| Sbjct 5788 AAACATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTC 5729 Query 13537 ATACCTATTAGTTTTACAGGAATTATATT-AGTTAAAAATTCTTTTTCTATAGACACAGC 13595 || ||||| | | ||| | | ||| | || |||| | ||||| || || Sbjct 5728 ATTCCTATCAAGTCACAAGGTAA-AGATTCACATATAAATGATCGTTCTACTTCTACTGC 5670 Query 13596 CTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT--AGATGTTTAAAA 13653 || |||| |||| ||| || ||| || | | | | |||||| || | || | Sbjct 5669 TTCTTTTACAATATTCTGAACAATTTCTTCTG--GTAATTTATTTTCCAGCAGACTATAT 5612 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 |||||||| ||| || ||| | || |||||||||||||| | ||| || ||| Sbjct 5611 ATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAA 5552 Query 13714 GTTAATCC-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 13772 |||| || || || || | ||||||| ||||| || || ||| || || Sbjct 5551 GTTAGCCCATGTAATTTATTTT-GTTTTTTAAACCAGAAAATAGCACAAAAACTACCACT 5493 Query 13773 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTT 13832 ||| ||||| || || || ||| |||| || |||||| |||| || || Sbjct 5492 AAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAA-----TTG 5438 Query 13833 GTTTGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890 || | || |||||||| |||||| || ||| ||||||| | || |||| Sbjct 5437 GTATTATTAATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCT 5378 Query 13891 ATTGCATTGAATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 13948 ||||| | ||||||| | || || ||| | ||| | || || ||||||| | | Sbjct 5377 ATTGCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATA-AT-TATCAATCAACA 5320 Query 13949 AGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAG 14008 | || || |||| || || || || || | ||||| |||||| |||||| ||| Sbjct 5319 AACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTAG 5260 Query 14009 CTTCTGACCATTGTACCTCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCA 14067 |||| | ||| || || ||||| || || ||||| ||||| ||| || ||| Sbjct 5259 CTTCCGTTATTTGAACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAAAACTATTCCA 5201 Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127 ||||| |||||||||||||| || | | ||| ||||| | || || | | || | | Sbjct 5200 TCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAAT 5141 Query 14128 TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14187 |||| |||| ||||| | || | ||||| || || |||||||||| ||| Sbjct 5140 TTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCT 5081 Query 14188 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14232 | ||||||||||| | |||||| ||| ||| || || ||| Sbjct 5080 TCTGCTTTTTTATAAAAGTCCCATACGTCTGGATACAAAATTGGA 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478545308242800