Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1378 351 1e-91 seq1502 159 5e-34 >seq1378 Length=4202 Score = 351 bits (388), Expect = 1e-91 Identities = 1103/1695 (65%), Gaps = 32/1695 (2%) Strand=Plus/Minus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 || ||||| || |||||| || |||||||| | || || |||||||| |||||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGAT 71058 || | ||||| || | | ||| | ||| | || | | || ||| ||| | | Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 2202 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118 ||| || ||||| | | | ||| || ||||| | |||||| || ||| || | Sbjct 2201 CCATTATGCGCAATTAACTGCTGTTTCATATCTTCGTCCCATAAGCCCCTATCGAATAGA 2142 Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178 || | | | |||||| ||||| || |||||||||| ||| ||||| | | ||| Sbjct 2141 TCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAA 2082 Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238 || ||||| ||||| ||||| | || || ||||| || | ||||||| || || ||| Sbjct 2081 ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCA 2022 Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTT 71298 || ||||||||||| | | || | ||| || | ||||||| || ||||| ||| Sbjct 2021 GTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTT 1962 Query 71299 AGAGATTCCCAATTCCA-AAGATCCGATGGTAC---AACNNNNNNNNNNNNNNNNNNNNN 71354 || ||||||||||| | | | || ||| Sbjct 1961 AGTTCATCCCAATTCCAGTACTTACTAT-CTACCTTTTTATTCCACATATCAAATTGTAG 1903 Query 71355 NATGCCGTTACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTA 71413 || || | |||||| | | | |||| ||| | || || ||||| | | |||| Sbjct 1902 AATACCTTGACTAGCTGGACTACCCTG-ATAAGATTCATAAGGTCCATGAATCATTGCTA 1844 Query 71414 GTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAA-AATCTTCTTATTGAGA 71472 ||| | | ||||| || |||| || ||||||||||| | ||||| |||| | Sbjct 1843 ATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTC-TATTCAAC 1785 Query 71473 TCTTGTGCTTC--CGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 71530 |||| ||||| | | | ||| | ||||| | || || ||||| | |||||||| | Sbjct 1784 TCTTTAGCTTCATCCGAC--TCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACC 1727 Query 71531 CTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAG 71590 | ||||| || ||||| |||||||| || ||||| ||||| | || |||||| ||||| Sbjct 1726 CCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAG 1667 Query 71591 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCT 71650 | |||||||| | || || ||||||| |||||||| || | ||| | || | Sbjct 1666 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1607 Query 71651 TTAGTTTGAGAAAATCAAATCTCCCATCTATTACAA----ACACGTT----CAAGGCAAC 71702 || ||| ||||| ||| | | | | || ||| ||| || || |||| Sbjct 1606 ATAATTTTTTAAAATTAAA--TTCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAAT 1549 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||| || |||||||| || || || |||| || | ||| | ||||||||| || Sbjct 1548 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1489 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 | ||||||||| ||||| || |||| ||||| |||||| || ||||| | || Sbjct 1488 CAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTC 1429 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 ||||| | ||| | ||| ||| |||||||| ||| || || || || ||| | Sbjct 1428 TTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 1369 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCG 71942 || | || || | || ||| | |||||| ||| || | ||||||| Sbjct 1368 ATCTTGTGCTAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATAATTT 1309 Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || || ||||| | | || ||| || |||||||| |||||||| || | Sbjct 1308 TTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTAAAGT 1249 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| | | || || ||||||| |||||| || | ||||||| ||||| ||| ||| Sbjct 1248 CCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATAAAA 1189 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 | |||||| | ||| || || || || ||| ||| | | ||| | || | | Sbjct 1188 CAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTCGAA 1129 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||||| |||||||| ||||| | || | || | | || | ||| |||||| Sbjct 1128 TATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCCTCC 1069 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||||| |||||||| || | |||| ||||||| ||||| || | | ||||| || Sbjct 1068 TTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCATTTGA 1009 Query 72243 TGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 ||||| || || ||||| | | | | | |||| | || || || Sbjct 1008 AATTCCATTCGTACCTCTAATATACGAATTTTGT-CCTCTTATATCTTGTACTGCTACAC 950 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 |||| || || || ||||| || | || || |||||| || || | || || | Sbjct 949 CTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATACCTT 890 Query 72362 CTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 |||| ||| |||| | ||| |||||||| ||||||||| | | | ||| Sbjct 889 CTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGTCTAGGAGTA 831 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || | ||||||||| || || | ||| || || || |||||| ||||| | || || Sbjct 830 CCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGATAA 771 Query 72481 GTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 || || | ||| |||||||| || | |||||| |||| || || | |||||| | Sbjct 770 GTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCATTAATAA 712 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 ||| || |||||||||| || ||||| || || || || || ||| |||| || || Sbjct 711 ATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAATGT 652 Query 72600 TTTAAAACCAAAATA 72614 ||||| |||||||| Sbjct 651 CTTAAATCCAAAATA 637 >seq1502 Length=19671 Score = 159 bits (176), Expect = 5e-34 Identities = 353/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Minus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 || |||||||||||||||||||| || ||| || || || | | | | ||| Sbjct 5584 CCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCATGTAATTTATTTTGTTTT 5525 Query 42146 TTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAA 42204 |||| ||| || |||| | |||| | ||| ||| || || |||||||| ||| Sbjct 5524 TTAAACCAGAAAATAG-CACAAAAACTACCACTAAACAATATACCTTCTACACATGCATT 5466 Query 42205 GGCAATAAGTCTCTCTCCATAACCGGCACTG---TCATGTATCCACTTTTGAGCCCAATC 42261 || | | | ||| || || | | || | || ||||| || |||||| Sbjct 5465 TGCTACTATCCGTTCTGCAAAA---GAATTGGTATTATTAATCCATTTGGCAGCCCACAA 5409 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATT 42321 || || ||||| ||| || || ||||||| || | ||| | || | || || Sbjct 5408 AGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGAAATAAATTTAATCGCTCCTT 5349 Query 42322 ACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381 ||| || | ||| |||| ||||| | ||| || ||||||||||||| || || | Sbjct 5348 TTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCAC 5289 Query 42382 GGCCATCTGAAATCCGTAGAAACATCTG-GCCTCGGTAACCTGTACTTCTGTACAAAATC 42440 || || ||||| || ||| ||| || || || | || |||||| | ||||| Sbjct 5288 TGCTATTTGAAAAGAATA-AAATTTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATT 5230 Query 42441 GTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 42500 ||| |||||||| |||||||| ||||| ||||||||||| || || ||||||| Sbjct 5229 TACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACATGTT 5170 Query 42501 TTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATAT 42560 ||||||||| |||||| | ||||||| | |||| || | ||| | |||| || Sbjct 5169 TTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAAT 5110 Query 42561 CTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 ||| |||||| | ||||||||||| |||||||| |||||||| Sbjct 5109 CTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATA 5067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671078210225200