Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1502 277 2e-69 >seq1502 Length=19671 Score = 277 bits (306), Expect = 2e-69 Identities = 604/896 (67%), Gaps = 9/896 (1%) Strand=Plus/Minus Query 12800 CTTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATT 12859 ||| ||||||| | | |||||||| || | ||| | | | || ||| ||| | | Sbjct 5956 CTTCAAAAATCGGTGTTGAGAGAAAACACTTGATCTTTTCTCTGTGCCATTACACCCGAT 5897 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || ||||| ||| |||||||||||| ||||| ||||||||||||| | || || Sbjct 5896 TTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGAGATATCAAA 5837 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| ||| ||||||||||| ||| || || |||| || ||||| | |||| Sbjct 5836 TCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCTAAACATTCTAAC 5777 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||| ||||| ||||| || ||||| ||| |||||| | ||||||||||| || Sbjct 5776 AATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCATTCCTATCAAG 5717 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 | ||| | || ||| || ||| | ||||| || |||||||| | || || Sbjct 5716 TCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTGCTTCTTTTACAATA 5657 Query 13100 TCTCTTATTACGTTCT-CTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 | ||| | | |||| || | |||| || | || | || | ||| ||| Sbjct 5656 T-TCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACTATATATTAAACAGTTAAA 5598 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 || || ||||||||||||||||| |||| || || ||| ||||| || | | Sbjct 5597 GTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCATGTAA 5538 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 | ||||||||| ||| || |||||| ||| ||| ||| ||||| ||||| Sbjct 5537 TTTATTTTGTTTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAATATACCTTC 5478 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTT 13338 || |||| |||| | || ||| || | | | | | ||| | ||||| || Sbjct 5477 TACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGGTATTATTA---ATCCATTT 5421 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 ||||| ||||| | |||||| || | | |||||||||||||||| |||||||| Sbjct 5420 GGCAGCCCACAAAGCTTTATTTTTAACAGCTGGT-ATATTTTCTATTGCGTGAAATAAAT 5362 Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457 | ||||| || |||||| |||| ||||| || || || ||||||||| Sbjct 5361 TTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAAT 5302 Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517 ||||||| |||| |||||||| ||| |||||| |||| || | || ||||||| Sbjct 5301 GAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTCCGTTATTTGAACTT 5242 Query 13518 CGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576 | ||||| || || || || ||||| |||||| || ||||| || |||||||| Sbjct 5241 CTCTTAAAAAT-TTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAAT 5183 Query 13577 GCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAA 13636 || | | || || ||||| | |||||| ||||| || ||| ||||| ||| Sbjct 5182 GCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAA 5123 Query 13637 TCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 || |||||||||||| ||| || | |||||||| ||||| | || || ||||| Sbjct 5122 TCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATA 5067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430944213612540