Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1821 127 5e-24 seq1502 105 2e-17 >seq1821 Length=1654 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| |||| || || ||||| ||||| || || || || Sbjct 380 CCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGAC 439 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| || ||||||| ||||||||| ||||| |||| |||||||||||||| || Sbjct 440 AATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGA 499 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| || || || || || || || ||||| || | ||||| ||||| || Sbjct 500 ATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATAGTATCCGATGGTTCAACA 559 Query 104513 TCTAGTGTAATAGTCTTACC 104532 || || || ||||| || || Sbjct 560 TCAAGAGTTATAGTTTTTCC 579 >seq1502 Length=19671 Score = 105 bits (116), Expect = 2e-17 Identities = 350/539 (65%), Gaps = 8/539 (1%) Strand=Plus/Plus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 ||||| |||||||| | |||||| ||||| | || || || | ||||| |||| Sbjct 5082 GCTTCATTTTGGACAGCAGAAGAGATAGATTTATCAAGCGATTTGAAAGATTTTGAAAAA 5141 Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 ||||| | | |||| | |||||| || | | || |||||||||| |||||| Sbjct 5142 TTAAATGAAAATGAAAAACATTTTATAAAACATGTGTTAGCATTTTTTGCAGCAAGTGAT 5201 Query 268880 GGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAG--GTACAGATTCCTGAA 268936 || || ||| |||||| | | ||| || || | ||||| || || || | ||| Sbjct 5202 GGAATAGTTTTAGAAAATTTGGCTAGTAAATTTTT---AAGAGAAGTTCAAATAACGGAA 5258 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | ||||| || || ||||| | || |||||||||||||| | |||||| Sbjct 5259 GCTAAGAAATTTTATTCTTTTCAAATAGCAGTGGAGAATATTCATTCAGAAACTTACAGT 5318 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 | || || |||| ||||||| | ||| | || || || ||||| | || Sbjct 5319 TTGTTGATTGATAATTATATAAAGGATGAAAAGGAGCGATTAAATTTATTTCACGCAATA 5378 Query 269057 AGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGC 269116 || ||| ||| | ||| ||| || |||||| |||||||| || ||| | Sbjct 5379 GAAAATATACCAGCTGTTAAAAATAAAGCTTTGTGGGCTGCCAAATGGATTAATAATACC 5438 Query 269117 GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGG 269176 ||| | |||| || |||| || ||| ||||||||||||||| ||| || Sbjct 5439 AATTCTTTTGCAGAACGGATAGTAGCAAATGCATGTGTAGAAGGTATATTGTTTAGTGGT 5498 Query 269177 TCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA-GGATTAACTTTCTC 269235 |||| ||||| || ||||| || |||| | || || || ||||||| Sbjct 5499 AGTTTTTGTGCTATTTTCTGGTTTAA-AAAACAAAATAAATTACATGGGCTAACTTTTAG 5557 Query 269236 TAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA 269294 ||| ||||| || || || || ||||| ||||| ||||| |||||| ||| || Sbjct 5558 TAATGAATTAATTAGTAGAGATGAAGGATTACATACAGACTTTAACTGTTTAATATATA 5616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151291150837160