Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq627 241 2e-58 seq291 154 2e-32 >seq627 Length=3391 Score = 241 bits (266), Expect = 2e-58 Identities = 484/712 (68%), Gaps = 23/712 (3%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||||| | ||||| ||||||| | || || Sbjct 1809 AATTTTAATTTTGAAGAATTAGGTATAGGTGCATTAGATGAAGAATTTAAGATAATCTTT 1750 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || | ||||| |||| | ||| | | || |||||| ||||||| | |||| Sbjct 1749 AGAAGAACCTTTGCAAGTAGAATATATCCAAATTATATTATAAAACAATTAGG-TATAAA 1691 Query 164512 -CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCG 164570 ||| | || |||||| ||||| ||||||| || ||| || ||||| || || ||| | Sbjct 1690 GCATGTGAAGGGAATTATATTATATGGACCACCAGGTACTGGAAAAACTTTGATTGCTAG 1631 Query 164571 ATGCATTGCTCAAGCTTTTAAA--TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTA 164628 | || | || | || || ||| || || ||||||| |||||||||| ||| || Sbjct 1630 ACAGATAGGAAAAACGTTAAATGCTCGAGAACC--TAAAATTATTAATGGTCCAGAAATA 1573 Query 164629 TTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAA 164688 || || ||||||||||| | || |||| ||| || |||| || ||| | || |||||| Sbjct 1572 TTAAATAAATATGTAGGACAATCTGAAGAAAATATTCGAAATTTATTTAAAGATGCTGAA 1513 Query 164689 GAAGAACA-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGAT 164747 |||| | ||| |||| | | | || |||||| | || | || ||||| || Sbjct 1512 TTAGAATATAAACAAAGTGGAGAAAATTCGTTG-TTACATATAATAATATTAGATGAAAT 1454 Query 164748 AGATGCTCTTTGCAAAAAACGTGGTGATAATATTA-------TTCATGATGCAGTG---- 164796 |||||| | || ||| || | || || | || | || || || || Sbjct 1453 AGATGCAATATGTAAACAAAGGGGGAATGCTTTTTCAAGTGGTACAGGAGTCAATGATAG 1394 Query 164797 ----GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAAT 164852 ||||||||||| | |||||||| ||||||||| | ||||||||||||||| | Sbjct 1393 TATAGTTAATCAGTTATTATCTAAAATTGATGGTGTAAATAGTTTAAATAATATTTTATT 1334 Query 164853 TGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATT 164912 | || ||||| || || ||||||||||||||| ||||||||| |||| ||| | || Sbjct 1333 AATTGGGATGACAAATAGAATTGATTTAATTGATGAAGCTTTATTAAGACCAGGTAGGTT 1274 Query 164913 AGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGT 164972 ||||| | ||||||||| |||| | || ||||| | ||||||| || || | Sbjct 1273 TGAATTACATATAGAAATATCTCTACCTAATAAGGAAGGTAGGGTTCAAATATTGAATAT 1214 Query 164973 TCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAAT 165032 |||| || |||| | | || ||| |||| ||||||||| || || | || | Sbjct 1213 TCATACAAAAAATATGAGAAACAGTAATAAATTAAGTCCCGATGTTAATATAGAAGAATT 1154 Query 165033 AGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 ||| | |||| |||| | || || ||| | || ||||||||| || Sbjct 1153 AGCCGAGAAAACCCCTAATTTTTCAGGAGCAGAAATTGAAGGATTAGTACGA 1102 >seq291 Length=4955 Score = 154 bits (170), Expect = 2e-32 Identities = 294/425 (69%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 6806 TTAATTGTTCTTTTATAGCTTTTA-TATGATCTAAATAAATATGAGCATCTCCTAGCGTA 6864 |||| ||| |||||| |||| | | |||||| ||||| ||| |||| ||||| || Sbjct 4359 TTAACTGTACTTTTA-AGCTGTCAATATGATTATTATAAACATGTGCATTTCCTAAAATA 4301 Query 6865 TGAATAAATTCACCTGGTTTCATATCA-ACAGCTTGAGCAATTAAATATGTTAATAATGC 6923 || || || | | || | | || | ||| |||| ||||| | || || |||| || Sbjct 4300 TGTATGAACTGTGCAGGCTGTAAATTACACA-CTTGTGCAATCATATGAGTGAATATTGA 4242 Query 6924 ATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTG 6983 ||| || || | ||||||||| || ||||| || | ||| ||| |||||||| ||| Sbjct 4241 ATAGGAGGCAATATTAAAAGGGACTCCTAAACCTAAATCACATGACCTTTGATA-CATAA 4183 Query 6984 -ACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAA 7042 ||| ||||| | || | | |||||||||| || || | |||||| ||||||| Sbjct 4182 TACATGATAATTTTCCATCAAAAACATAAAATTGGCATAAAATATGACAAGGAGGTAGTG 4123 Query 7043 CAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGAT 7102 | ||||| | ||| |||||| ||| || | ||| | |||| | |||||| Sbjct 4122 CCATTTGATCAAGATCTTTAACATTCCATGCACACAAAATAATTCTTCTACTAGTTGGAT 4063 Query 7103 TTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAG 7162 |||||| | ||||| ||| ||||||||| | || | | ||||||| || | Sbjct 4062 CATTTTTTATTAAATGGATAATATTTTTTAATTGATCAACTCCTTTATCTTCATAGTTGG 4003 Query 7163 TATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTA 7222 ||| |||| |||| | ||| || ||||| ||||||||||| ||||| ||||| |||| Sbjct 4002 CATGCATATTTGTATATTCAGCACCGAAATGCCTCCATTGAAAACCATATATAGGTCCTA 3943 Query 7223 AATCA 7227 | ||| Sbjct 3942 AGTCA 3938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595817850132000