Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1502 150 2e-31 >seq1502 Length=19671 Score = 150 bits (166), Expect = 2e-31 Identities = 569/887 (64%), Gaps = 31/887 (3%) Strand=Plus/Minus Query 21146 GAGAAAACATT--ATCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTC 21203 ||||||||| | ||||| | | | || ||| | ||| ||| |||||||| ||||| Sbjct 5937 GAGAAAACACTTGATCTTTTCTCTGTGCCATTACACCCGATTTCTGATAATCGGCAACTC 5878 Query 21204 TTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGAT 21263 ||||||||||||||||||| ||||||| | ||||| | ||||| ||| ||| |||| Sbjct 5877 TTTTTTCGAAAAAATTTGTTTTTCCTTGAAGAGATATCAAATCCATCCAATTAAAAGGAT 5818 Query 21264 TTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATT 21323 ||| || | ||| | ||| || || | | ||| |||||||| || ||||||| Sbjct 5817 TTTTTGAATAAAAGACTTTTGAGCATCCTAAACATTCTAACAATCTATCAGCCACAAATT 5758 Query 21324 CTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTG 21383 | || ||||| |||||||| ||||||| || ||||| | ||| | || || Sbjct 5757 CAATGTATTGTGACATTAATCTTGAATTCATTCCTATCAAGTCACAAGGTAAAGATTCAC 5698 Query 21384 TCAAAAAAGATTTTTCTATAGAGACGGCTTC---AACAATTAT-------ATTTATTATC 21433 | ||| ||| ||||| || ||||| ||||| | |||| || | Sbjct 5697 ATATAAATGATCGTTCTACTTCTACTGCTTCTTTTACAATATTCTGAACAATTTCTTCTG 5638 Query 21434 CTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGC 21493 || || || | | || | | || | || ||||| ||| || ||| Sbjct 5637 GTA-ATTTATT------TTCCAGCA---GACTATATATTAAACAGTTAAAGTCTGTATGT 5588 Query 21494 AAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC-GGGCATTAATCCTCT 21552 || |||||||| ||||| |||||||||||| ||| |||| || | ||| || | | Sbjct 5587 AATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCATGTAATTTATTTTGT 5528 Query 21553 CTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAG 21611 ||||| ||||| || || | | |||| || || ||| || || || || || | Sbjct 5527 -TTTTTAAACCAGAAAATAG-CACAAAAACTACCACTAAACAATATACCTTCTACACATG 5470 Query 21612 CAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCC 21671 || ||| |||| ||||| | | ||| | ||| |||||||| | |||| Sbjct 5469 CATTTGCTACTATCCGTTCTGCAAA---AGAATTGGTATTATTAATCCATTTGGCAGCCC 5413 Query 21672 ATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAttttttt 21731 | || || | ||||| | || | || || || | || | || | | Sbjct 5412 ACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGAAATAAATTTAATCGCT 5353 Query 21732 CATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTT 21791 | | | |||| |||| ||| || |||| ||||| ||||| | Sbjct 5352 CCTTTTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCT 5293 Query 21792 CTATCGCTATCTGAAATCCGTAAAAACATCTT-GCCTCTGAACATTGAACCTCGGAATAA 21850 | | ||||| ||||| | |||| |||| || || | |||||| || || Sbjct 5292 CCACTGCTATTTGAAAAGAAT-AAAATTTCTTAGCTTCCGTTATTTGAACTTCTCTTAAA 5234 Query 21851 AATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATA 21910 ||| |||||| ||||| |||||||||||||| || ||||||||||| || | | Sbjct 5233 AATTTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACA 5174 Query 21911 TTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGAT 21970 | ||||||||||| | ||| || || ||||||||| ||||| ||||| ||||| Sbjct 5173 TGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAATCGCTTGAT 5114 Query 21971 AAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATA 22017 ||||||| ||||| | ||||||||| ||| || |||||||| Sbjct 5113 AAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATA 5067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531852463514800