Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1378 333 3e-86 seq1502 168 8e-37 >seq1378 Length=4202 Score = 333 bits (368), Expect = 3e-86 Identities = 1101/1698 (65%), Gaps = 38/1698 (2%) Strand=Plus/Minus Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 || ||||| || |||||| || |||||||| | || || |||||||| |||||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 62196 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGAT 62252 || | ||||| || | | ||| | ||| | || | | || ||| ||| | | Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 2202 Query 62253 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62312 ||| || || || | | | || || || || | |||||| || ||| || | Sbjct 2201 CCATTATGCGCAATTAACTGCTGTTTCATATCTTCGTCCCATAAGCCCCTATCGAATAGA 2142 Query 62313 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62372 || | | | ||| || ||||| || |||||||||| ||| ||||| | | ||| Sbjct 2141 TCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAA 2082 Query 62373 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62432 || ||||| ||||| ||||| | || || ||||| || | ||||||| || || ||| Sbjct 2081 ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCA 2022 Query 62433 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62492 || ||||||||||| | | |||| ||| || | ||| | | | | ||||| ||| Sbjct 2021 GTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTT 1962 Query 62493 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT-----TGTA 62547 || ||||||||||| | | || | | | | |||| Sbjct 1961 AGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTA 1904 Query 62548 GAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62606 ||||||| | ||| || | || | ||| ||| | || || ||||| | || ||| Sbjct 1903 GAATACCTTGACTAGCTGGACTACCCTG-ATAAGATTCATAAGGTCCATGAATCATTGCT 1845 Query 62607 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAG 62665 | ||| | | ||||| ||| | || || ||||||||||| || ||||| ||| | Sbjct 1844 AATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-ATTCAA 1786 Query 62666 ATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATC 62724 |||| ||||| | | | ||| | ||||| | || || ||||| | || ||||| | Sbjct 1785 CTCTTTAGCTTC-ATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACC 1727 Query 62725 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62784 | |||||||| ||||| ||||||||||| ||||| ||||| | || |||||| ||||| Sbjct 1726 CCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAG 1667 Query 62785 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 62844 | |||||||| | || || ||||||| |||||||| ||| | ||| | || | Sbjct 1666 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1607 Query 62845 TCAGTTTGAGAAAATCAAATCGCCCATCTATT--------ACAAACATGTTCAAGGCAAC 62896 | ||| ||||| |||| | | | || ||||| || || |||| Sbjct 1606 ATAATTTTTTAAAATTAAAT--TCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAAT 1549 Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 ||| || |||||||| || || || |||| || | ||| | || || ||| || Sbjct 1548 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1489 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 | ||||||||| |||||||| |||| ||||| |||||| || ||||| | || Sbjct 1488 CAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTC 1429 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 ||||| | || ||||| ||| |||||||| ||| || || || || ||| | Sbjct 1428 TTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 1369 Query 63077 GACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTATACAA 63133 || | || || || || ||| | | | ||||| ||| || ||| || Sbjct 1368 ATCTTGTGC---TAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATAA 1312 Query 63134 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 63193 | ||| || || || ||||| | | ||| || ||||||| |||||||| || Sbjct 1311 TTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTAA 1252 Query 63194 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 | ||| | | | || || |||| |||||| || | ||||||| ||||| ||| Sbjct 1251 AGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATA 1192 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 ||| | |||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 1191 AAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTC 1132 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | ||||| |||||||| ||||| | || | || | | || | ||| ||| Sbjct 1131 GAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCC 1072 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 ||| ||||||| |||||||| || | |||| ||||||| ||||| || | | || || Sbjct 1071 TCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCATT 1012 Query 63434 TGATATACCATTGGTACCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATA 63492 ||| || ||||| ||||| ||||| | | | | | |||| | || || Sbjct 1011 TGAAATTCCATTCGTACCTCTAATATACGAATTTTGT-CCTCTTATATCTTGTACTGCTA 953 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 |||||| || || || ||||| || | || || |||||| || || | |||| Sbjct 952 CACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATAC 893 Query 63553 CCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 | ||||| ||| |||| | ||| |||||||| ||||||||| | | | | Sbjct 892 CTTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGTCTAGGA 834 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || | ||||||||| || || | ||| || || || |||||| ||| | | || Sbjct 833 GTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGA 774 Query 63672 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || || | ||| |||||||| || | ||| || |||| | || | |||||| Sbjct 773 TAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCATTAA 715 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 | || || |||||||||| || |||||||| || || || || ||| |||| || Sbjct 714 TAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAA 655 Query 63791 AGTTTTAAAACCAAAATA 63808 || ||||| |||||||| Sbjct 654 TGTCTTAAATCCAAAATA 637 >seq1502 Length=19671 Score = 168 bits (186), Expect = 8e-37 Identities = 268/380 (71%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| || |||||| || || ||||| ||| || || ||||||| || | | Sbjct 5428 ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGA 5369 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || | || | || || ||| || | |||| |||| ||||| | ||| || || Sbjct 5368 AATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTT 5309 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT-AGCCTCGGTAAT 33659 || |||||||| || || | || || ||||| || ||| ||| ||| || || || Sbjct 5308 TCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATA-AAATTTCTTAGCTTCCGTTAT 5250 Query 33660 CTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 || |||||| | ||||| || | ||||||||||| |||||||| ||||| ||| Sbjct 5249 TTGAACTTCTCTTAAAAAT--TTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCT 5192 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33777 |||||||| || || |||||||||||||||| |||||| | | ||| ||| | || Sbjct 5191 GCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAA 5132 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 || || | ||| | |||| ||||| ||||| ||||||||||||| || ||||| ||| Sbjct 5131 TCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTT 5072 Query 33838 TTATACATGTTCCAGATGTC 33857 ||||| | || ||| | ||| Sbjct 5071 TTATAAAAGTCCCATACGTC 5052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622890589673200