Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1378 163 7e-35 seq291 131 4e-25 >seq1378 Length=4202 Score = 163 bits (180), Expect = 7e-35 Identities = 596/929 (64%), Gaps = 12/929 (1%) Strand=Plus/Plus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| |||||| | || | ||| || ||| ||||| || | Sbjct 631 TATGATTATTTTGGATTTAAGACATTAGAAAGATCTTATTTATTACGTATTAACAACAAA 690 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| ||||| | || || ||| | |||||| | || | || ||||| ||| ||| Sbjct 691 ATTATTGAAAGACCACAACATTTATTAATGAGAGTATCGATAGGTATACATATTGATGAT 750 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCC 363558 | ||| || | ||||| ||| | || | || ||| || |||| || || Sbjct 751 ATAGATAAAGCATTAGAAACTTATCA--TTTGATGT-CTCAAAAATATTTCACTCATGCT 807 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || |||||| | | ||| |||| |||| || || || ||||| ||||| |||||| || Sbjct 808 ACACCAACATTATTTAATTCTGGTACTCCTAGACCCCAAATGTCGTCTTGTTTTCTTTTA 867 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 ||||| ||||| || || ||||| || || ||||| || | |||||||||||| Sbjct 868 TCTATGAAATCAGATTCAATAGAAGGTATATTCGAAACACTAAAACAGTGTGCTCTTATT 927 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || | || || || || |||||| | | || || | | | ||| || || Sbjct 928 AGTAAAACAGCTGGTGGTATAGGTGTAGCAGTACAAGATATAAGAGGACAAAATTCGTAT 987 Query 363739 ATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 ||| | || || ||| || ||||| || || || ||| | | || ||| | || Sbjct 988 ATTAGAGGTACGAATGGAATTTCAAATGGACTCGTACCTATGTTAAGAGTTTTTAATGAT 1047 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 || || || || || || || || |||||||| | ||||| | |||||| | ||| | Sbjct 1048 ACAGCTAGATATGTAGATCAAGGAGGAGGAAAAAGAAAAGGTTCTTTTGCTGTTTATATT 1107 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 || || ||| | ||||| || || ||| | || | | ||||| || ||||| Sbjct 1108 GAACCATGGCATTCAGATATATTCGAATTTTTAGATTTAAGAAAAAATCATGGCAAAGAA 1167 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 ||||| | ||| | ||| |||| ||||| |||||||| ||||| || ||||| | Sbjct 1168 GAATTAAGAGCAAGAGATTTGTTTTATGCTGTTTGGGTTCCTGACTTGTTCATGAAAAGA 1227 Query 363979 GTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 || | | | | | |||||| | | | || ||| | ||||| ||||| || || Sbjct 1228 GTAAAAGAAAATCAAAATTGGACTTTAATGTGTCCAAATGAATGCCCAGGACTAAGTGAA 1287 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAA---GGCT 364095 ||||||||| || | || |||| | ||||||||| || | ||| || Sbjct 1288 ACATGGGGTGAAGAATTTGAAAAATTATATGTTAAGTATGAA---GAAGAAAATATGGGC 1344 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 || || | ||||| | |||||||||| || | | || ||||| ||| Sbjct 1345 AAAAAAACTGTATTAGCACAAGATTTATGGTTTGCTATATTACAAAGTCAAATTGAAACA 1404 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || || |||||||| || ||||| || || || || || || || | | || Sbjct 1405 GGTGTTCCATATATGTTATATAAAGACTCATGTAATGCTAAATCGAATCAAAAAAATCTA 1464 Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 ||||| || | || || | ||| || |||||||| || || | || || || Sbjct 1465 GGTACTATCAAATGTAGTAATTTGTGTTGTGAAATTATTGAGTATACTTCACCTGATGAA 1524 Query 364276 ACTGCCGTATGTAACCTTGCGTCGATCGC 364304 ||| |||||||| ||||| || || || Sbjct 1525 GTTGCTGTATGTAATCTTGCTTCTATTGC 1553 >seq291 Length=4955 Score = 131 bits (144), Expect = 4e-25 Identities = 414/631 (66%), Gaps = 12/631 (2%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATA--TTGGAAGGGAATTGTCGAAGAACTTCT 111370 |||||||| | | ||||||||| | || || || ||||| | ||||| | || Sbjct 3760 ATTTTCCATTATTAACAACAAAGAAATTATTCCTTAGA--GGAATAATTGAAGAGTTACT 3817 Query 111371 GTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCA-AAAAATGTAAAAATTT 111429 |||||||| | ||| ||||||| |||| | ||| | |||||||||| ||| | Sbjct 3818 TTGGTTTATAAGAGGAGAAACAAATGGAAAT-ACTTTGTTAAATAAAAATGTAAGAATAT 3876 Query 111430 GGGATGGAAATGGATCACGTGACTTTCTAGATT-CAGTTGGTCTTGTCGACAACGAAGAA 111488 |||| | ||||||| || | || ||| | ||| ||| | | || | | |||| Sbjct 3877 GGGAAGCAAATGGAACAAGAGAATTTTTGGATAACAGAAAATTAT-TCCATAGAGAAGTT 3935 Query 111489 GGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACC 111548 ||| | ||||| | || || ||||||||| | || || ||||| || || | || Sbjct 3936 AATGACTTAGGACCTATATATGGTTTTCAATGGAGGCATTTCGGTGCTGAATATACAAAT 3995 Query 111549 ATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATT 111608 ||||| | | ||||| | ||| |||||||||| | ||| | || || ||| Sbjct 3996 ATGCATGCCAACTATGAAGATAAAGGAGTTGATCAATTAAAAAATATTATCCATTTAATA 4055 Query 111609 AAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAA 111668 || || | |||||| | | | |||||| || |||||||||| || | | || Sbjct 4056 AAAAATGATCCAACTAGTAGAAGAATTATTTTGTGTGCATGGAATGTTAAAGATCTTGAT 4115 Query 111669 AAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 |||||||||| || || |||||| || | ||||| |||||||| || || | | Sbjct 4116 CAAATGGCACTACCTCCTTGTCATATTTTATGCCAATTTTATGTTTTTGATGGAAAATTA 4175 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||||| |||||||| | || |||| | ||| | || || || ||||||||||| Sbjct 4176 TCATGTATTATGTATCAAAGGTCATGTGATTTAGGTTTAGGAGTCCCTTTTAATATTGCC 4235 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTC 111848 || || || | ||| | || || || | ||| | | || | | ||| Sbjct 4236 TCCTATTCAATATTCACTCATATGATTGCACAAGTGTGTAATTTACAGCCTGCACAGTTC 4295 Query 111849 ATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCA-CTTAAAA-CAC 111906 || || || | ||| |||| |||||||| | || || ||||| || ||||||| || Sbjct 4296 ATACATATTTTAGGAAATGCACATGTTTATAATAATCATATTGA--CAGCTTAAAAGTAC 4353 Query 111907 AGTTGAAGCGCAAACCATACGATTTCCCAAC 111937 |||| || | | ||| ||| |||||||| Sbjct 4354 AGTTAAATAGGATACCCTACCCCTTCCCAAC 4384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303232196685140