Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1378 91.5 1e-13 seq1821 84.2 2e-11 >seq1378 Length=4202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 662/1050 (63%), Gaps = 51/1050 (5%) Strand=Plus/Minus Query 132251 TTACTAGTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTC 132310 ||||||||| | || || || |||||||| || || | |||||||| ||| | || || Sbjct 2078 TTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCAGTT 2019 Query 132311 GGCATGTAGGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGC 132370 ||||| |||| | ||| ||||| | | || ||| | |||| | || || Sbjct 2018 GGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTTAGT 1959 Query 132371 TCGTCCCAGTTCCACAGATCATTCGATTGAGAGAT--ATTCCACAAATCAAACTGTAAAT 132428 || ||||| ||||| | | | | || | | |||||||| |||||| |||| | Sbjct 1958 TCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTAGAA 1901 Query 132429 GACCGCTACTTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTT 132488 ||| ||| || ||| || | |||||| || || | ||| || | | || | || Sbjct 1900 TACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAATCATTGCTAATT 1841 Query 132489 CTATGCTC-TGACTCAGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCC 132547 | || | | || | | || |||| || || || || | ||| |||||||||| || Sbjct 1840 CCATAGACATTTCTAAAG-CAGCATAGTACATGGTTTCGAATATTCTTCTATTCAACTCT 1782 Query 132548 CTTGCTTGTT--GACTGTCGTAGGGCAAATTTAAAATAGCG--AACGCATCGGCAAGTCC 132603 | |||| | |||| | ||||| | || | ||| ||| || | ||| || | || Sbjct 1781 TTAGCTTCATCCGACT--CATAGGG-ATATCTCAAA-AGCATAAAAGTATCTGCTAACCC 1726 Query 132604 CTGAATGCCGATACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGG 132663 ||||| || ||||| || |||||||| | || || |||| || | | || Sbjct 1725 CTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAGG 1666 Query 132664 ATAAAAGTTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATA 132723 ||| | ||| | || |||||||||| ||||| |||| | || | | | | || ||| Sbjct 1665 GTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCATA 1606 Query 132724 TAGCGATTCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCAAAACAATTG---ACGGCAAT 132780 || || ||| | ||| | ||| | || | | | | | ||| | ||||| Sbjct 1605 TAATTTTTTAAAATTAAATTCTTTTTT---TTCCAAGTCCACAAATTTGCATAAAGCAAT 1549 Query 132781 CGAGGCCAAATTGCATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACA 132840 || || | ||| ||||| || || | | |||||| | ||||| ||| Sbjct 1548 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1489 Query 132841 CAAATTACTGTTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTTA-T 132899 ||||||||| | ||| || | ||||||||||| ||| | || || | | | Sbjct 1488 CAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATT-ACATGAGT 1430 Query 132900 CTTTATGCAACATGTACGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAA 132959 |||||| ||||| || ||| | || ||||| | ||| ||| |||| | Sbjct 1429 CTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTG--TAATAT--------- 1381 Query 132960 GATCTAACGCCAAAATTTGTTCTT-TAAACTT-----GCCCTGAGTCTCGTA-----ACT 133008 | | ||| ||| |||| || || | || |||| | | || | ||| Sbjct 1380 -AGCAAACCATAAATCTTGTGCTAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACT 1322 Query 133009 TT-CGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAG 133067 | | |||||| ||||||||||| || | || | | || || || || | | Sbjct 1321 TAACATATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTG 1262 Query 133068 GACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCC 133127 ||||||| || | ||| |||| | | | || |||||||||||||| ||| || Sbjct 1261 GACACATTAAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCC 1202 Query 133128 ACATGGCAAAAAATAAATCGCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAAG 133186 | | ||| |||| ||||| | || ||| || ||||| ||| |||| | | || Sbjct 1201 AAACAGCATAAAACAAATCTCTTGCTCTTAAT-TCTTCTTTGCCATGATTTTTTCTTAAA 1143 Query 133187 TCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTC 133246 || ||||| || || |||| |||||| || || ||||| || || |||| ||||| Sbjct 1142 TCTAAAAATTCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTT 1083 Query 133247 CTTTT---ACCTCCCTGATCCACATGTCTA 133273 ||||| ||||| ||||| |||| |||| Sbjct 1082 CTTTTTCCTCCTCCTTGATCTACATATCTA 1053 >seq1821 Length=1654 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| ||||| || || || |||||||||||| | || | | || || ||| | ||| Sbjct 513 GACAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACAATTAGAA 454 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | ||||| |||||||||||||| || || | || ||||| ||| Sbjct 453 GATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCAACCCTACACTTAGTTTTA 394 Query 24204 AGATTGAGAGGAGG 24217 ||||| ||||| || Sbjct 393 AGATTAAGAGGTGG 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429897906326850