Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1378 342 6e-89 seq1502 161 1e-34 >seq1378 Length=4202 Score = 342 bits (378), Expect = 6e-89 Identities = 1103/1698 (65%), Gaps = 38/1698 (2%) Strand=Plus/Minus Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 || ||||| || |||||| || |||||||| | ||||| |||||||| |||||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 62051 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGAT 62107 || | ||||| || | | ||| | ||| | || | | || ||| ||| | | Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 2202 Query 62108 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62167 ||| || || || | | | || || || || | |||||| || ||| || | Sbjct 2201 CCATTATGCGCAATTAACTGCTGTTTCATATCTTCGTCCCATAAGCCCCTATCGAATAGA 2142 Query 62168 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62227 || | | | ||| || ||||| || |||||||||| ||| ||||| | | ||| Sbjct 2141 TCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAA 2082 Query 62228 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62287 || ||||| ||||| ||||| | || || ||||| || | ||||||| || || ||| Sbjct 2081 ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCA 2022 Query 62288 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62347 || ||||||||||| | | |||| ||| || | ||| | | | | ||||| ||| Sbjct 2021 GTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTT 1962 Query 62348 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT-----TGTA 62402 || ||||||||||| | | || | | | | |||| Sbjct 1961 AGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTA 1904 Query 62403 GAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62461 ||||||| | ||| || | || | ||| ||| | || || ||||| | || ||| Sbjct 1903 GAATACCTTGACTAGCTGGACTACCCTG-ATAAGATTCATAAGGTCCATGAATCATTGCT 1845 Query 62462 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAG 62520 | ||| | | ||||| ||| | || || ||||||||||| || ||||| ||| | Sbjct 1844 AATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-ATTCAA 1786 Query 62521 ATCTTGCGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 62579 |||| ||||| | | | ||| | ||||| | || || ||||| | |||||||| | Sbjct 1785 CTCTTTAGCTTC-ATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACC 1727 Query 62580 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62639 | |||||||| ||||| ||||||||||| ||||| ||||| | || |||||| ||||| Sbjct 1726 CCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAG 1667 Query 62640 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 62699 | |||||||| | || || ||||||| |||||||| ||| | ||| | || | Sbjct 1666 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1607 Query 62700 TCAGTTTGAGAAAATCAAATCGCCCATCTATT--------ACAAACATGTTCAATGCAAC 62751 | ||| ||||| |||| | | | || ||||| || || |||| Sbjct 1606 ATAATTTTTTAAAATTAAAT--TCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAAT 1549 Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811 ||| || |||||||| || || || |||| || | ||| | || || ||| || Sbjct 1548 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1489 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 | ||||||||| ||||| || |||| ||||| |||||| || ||||| | || Sbjct 1488 CAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTC 1429 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 ||||| | || ||||| ||| |||||||| ||| || || || || ||| | Sbjct 1428 TTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 1369 Query 62932 GACTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAA 62988 || | || || || || ||| | | | |||||| ||| || ||| || Sbjct 1368 ATCTTGTGC---TAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATAA 1312 Query 62989 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAA 63048 | ||| || || || ||||| | ||||| || ||||||| |||||||| || Sbjct 1311 TTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTAA 1252 Query 63049 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 | ||| | | | || || |||| |||||| || | ||||||| ||||| ||| Sbjct 1251 AGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATA 1192 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 ||| | |||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 1191 AAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTC 1132 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | ||||| |||||||| ||||| | || | || | | || | ||| ||| Sbjct 1131 GAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCC 1072 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 ||| ||||||| |||||||| || | |||| ||||||| ||||| || | | ||||| Sbjct 1071 TCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCATT 1012 Query 63289 GGATGTACCATTGGTCCCTGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATA 63347 || | ||||| || ||| ||||| | | | | | |||| | || || Sbjct 1011 TGAAATTCCATTCGTACCTCTAATATACGAATTTTGT-CCTCTTATATCTTGTACTGCTA 953 Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407 |||||| || || || ||||| || | || || |||||| || || | || | Sbjct 952 CACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATAC 893 Query 63408 CCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 | ||||| ||| |||| | ||| |||||||| ||||||||| | | | | Sbjct 892 CTTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGTCTAGGA 834 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || | ||||||||| || || | ||| ||||| || |||||| ||| | | || Sbjct 833 GTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGA 774 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || || | ||| |||||||| || | ||| || |||| | || | |||||| Sbjct 773 TAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCATTAA 715 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 | || || |||||||||| || |||||||| || || || || ||| |||| || Sbjct 714 TAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAA 655 Query 63646 AGTTTTAAAACCAAAATA 63663 || ||||| |||||||| Sbjct 654 TGTCTTAAATCCAAAATA 637 >seq1502 Length=19671 Score = 161 bits (178), Expect = 1e-34 Identities = 224/311 (72%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 ||| || | ||| |||||||||| | ||| || |||| |||||||| || || | || Sbjct 5345 ATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGC 5286 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 |||||||| || || |||| || || || || |||||| | ||||| | | Sbjct 5285 TATTTGAAAAGAATAAAATTTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATT-TAC 5227 Query 33041 T-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 | || |||||||| |||||||| ||||| ||||||||||| || || |||||||||| Sbjct 5226 TAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTTA 5167 Query 33100 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCA 33159 |||||| |||||| | | ||| ||| | |||| || | ||| | |||| ||| | Sbjct 5166 TAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTA 5107 Query 33160 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 33219 ||||| ||||||||||||| || ||||| |||||||| | | ||| | ||| ||| Sbjct 5106 TCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATAAAAGTCCCATACGTCTGGAT 5047 Query 33220 ATTGAATTGGA 33230 | ||||||| Sbjct 5046 ACAAAATTGGA 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633574418692000