Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1502 268 1e-66 >seq1502 Length=19671 Score = 268 bits (296), Expect = 1e-66 Identities = 602/885 (68%), Gaps = 21/885 (2%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||| |||| || || || ||||| ||||||| || |||||||| ||||||| Sbjct 5909 CATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTG 5850 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||||||| ||| || | | | | ||||| || | | | || |||||| | | Sbjct 5849 AAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAA-AAGACTTTTGAGCATC 5791 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 | | | | | || ||||||||||| |||||||| ||||| || ||||| || ||| Sbjct 5790 CTAAACATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAAT 5731 Query 92967 TCATTCCTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAA 93023 ||||||||| ||| | | ||||| || || | || ||| |||| | | | | Sbjct 5730 TCATTCCTATCAAGTCACA-AGGTAAAGATTCACATATAAATGATCGTTCT--ACTTCTA 5674 Query 93024 CGGCTTCTTTCAAGAT-TTCT-ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT 93081 | |||||||| | || |||| | | | | || | |||| ||| | | | | | | Sbjct 5673 CTGCTTCTTTTACAATATTCTGAACAATTT-CT-TCTGGTAATTTATTTTCCAGCAGACT 5616 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 || ||||| || |||||| |||||||| ||||| |||| || || ||||| || Sbjct 5615 ATATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACT 5556 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 || |||| || |||| | |||| || | ||| || || | | ||||||||| Sbjct 5555 AAAAGTTAGCCCATGTAATTTATTTTGTTTTTTAAACCAGAAAATAGCACAAAAACTACC 5496 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 | ||| ||||||||||| || |||| ||| || || ||||| |||||| || Sbjct 5495 ACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGGT 5436 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 |||| | |||||||| |||||| ||||| || |||| | |||| |||| Sbjct 5435 ATTATTA---ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTC 5379 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 || |||| ||||| | |||||| | ||| ||| || |||| || |||| Sbjct 5378 TATTGCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAA 5319 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT-AG 93440 | || |||| ||||| | |||||||| ||| ||||| || || ||| ||| || Sbjct 5318 ACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATA-AAATTTCTTAG 5260 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATACCA 93499 ||||||| || || |||||| ||||| | ||| | | |||||| ||||| ||| Sbjct 5259 CTTCCGTTATTTGAACTTCTCTTAAAAATTTA-CTAGCCAAATTTTCTAAAACTATTCCA 5201 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 || |||||||||||| || || | ||| |||||||||||||| |||| || || | Sbjct 5200 TCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAAT 5141 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 || || |||| | ||| |||| | ||| | ||||| | |||||||| || ||| Sbjct 5140 TTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCT 5081 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 ||||||||||| || | ||||||| |||| |||| ||||||| Sbjct 5080 TCTGCTTTTTTATAAAAGTCCCATACGTCTGGATACAAAATTGGA 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556810195274800