Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq260 652 0.0 seq428 389 3e-102 seq3920 203 2e-46 seq1378 165 6e-35 seq1654 109 4e-18 >seq260 Length=2304 Score = 652 bits (722), Expect = 0.0 Identities = 1130/1618 (70%), Gaps = 52/1618 (3%) Strand=Plus/Minus Query 517130 TTTTTCTTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGA 517189 || |||| | ||| || ||| | ||| || || || ||| ||| | ||||||| Sbjct 1744 TTATTCTCTTCATCCTCTGCTTTATATTTTTCTGCATCATTAACCATACGATCAATTT-- 1687 Query 517190 TCTTCAGAGAAT---CTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGT- 517245 |||||| | || || || || ||| ||||||||||||| || |||||| Sbjct 1686 -CTTCAGGGGATAACCTACCCTTATCATTGGTAATAGTAATATGATT----TTGTTTTCC 1632 Query 517246 --TGAT-TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 517302 || | || ||| | || || ||||| | ||| ||||| ||||| | |||||| || || Sbjct 1631 CGTGCTCTTCTCAACAGCTGTAACATTTAAAATTCCATTTGCATCTATATCAAACGTAAC 1572 Query 517303 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAG 517362 ||||||||| || || || | |||||||| || || || |||| |||| | || | Sbjct 1571 TTCAATTTGTGGTACTTTCCTAGGGGCAGGTGGTATACCATCTAAATGAAATTTACCTAA 1512 Query 517363 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA-- 517420 |||||||||||| || ||| || ||| || || | | |||||| |||| ||| Sbjct 1511 CAAATTATTATCTTTTGTTAATGCTCTTTCTCCTTCATATACTTGGAT--TAAC-ACACC 1455 Query 517421 -GTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTT 517479 | ||| ||||| | ||| || ||||| | | |||||| ||||| ||||| || Sbjct 1454 TGGTTGGTTATCAGCATACGTCGTAAAGATTTGACTTTTTTTTGCTGGAATAGTTGTATT 1395 Query 517480 TCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGT 517539 ||| ||||| | || ||||||| |||||| || ||||||||||| | || | ||||| Sbjct 1394 TCTTTCAATCAATTTTGTCATAACACCACCAGCAGTTTCTAAACCTAAGGATA-AGGAGC 1336 Query 517540 G-ACATCAACTAGGACAATA--TTTTGAAGTTTTTCATCAGTTTGACCAACA-AGAATA- 517594 ||||| | || |||||| | ||||| ||| | ||| || | | |||| Sbjct 1335 ATACATCTAATA--ACAATAAATCTTGAACAG---CATTGGACTGATCACCCGATAATAT 1281 Query 517595 -GCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAG 517653 |||||||| | || ||||||||||| ||||||||||| || |||| || | | | Sbjct 1280 TGCTGCTTGTACTGCTGCACCATATGCTACAGCTTCATCTGGGTTAATAGATCTACATGC 1221 Query 517654 TTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGAT 517711 || ||| || || ||||| | |||| | ||| || ||||||||| || | ||| Sbjct 1220 TTCTTTGCCGTTAAAAAATTCTTTGATTAATGTTTG--TATCTTAGGAATTCGTGTTGAA 1163 Query 517712 CCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACT 517771 || |||||||| |||| |||||| || | |||||||| | | ||| ||| ||| Sbjct 1162 CCACCAACTAAAACAACTTCATGTACACTTTTTTTATCCATCATAGCATCTTTTAAGACT 1103 Query 517772 TTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 517831 || || || ||| | | | || || |||| ||| | ||||| ||| | ||| Sbjct 1102 TTCTCTACTGGTACTAACGTATCCCTGAAATAGTCAATACATAACTCTTCAAATCTTGCT 1043 Query 517832 CTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT 517891 ||| | | || ||| ||||||| || ||||| || | ||||||| ||| || |||| | Sbjct 1042 CTACTTACTGTTACACTATAATCTATACCTTCAAAAAGGGAATCAATTTCGATGGTAGCT 983 Query 517892 TGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG 517951 || || || || || | | |||||| || | ||||||| ||| |||| |||| ||| Sbjct 982 TGTGTAGAGGATGACAACGTACGTTTGGCCCTTTCACATTGTGTTCTTAACCTTCTTAAT 923 Query 517952 GCTTT--TGCTGATTGATTCAAATCTGTTT---TATATTTTCTCTTGAAATCTTCAACAC 518006 ||| | | | ||||| |||||| | ||| ||||||||| |||||||| |||| Sbjct 922 GCTCTACTATTTTTTGAT--AAATCTTTACCCCTATTTTTTCTCTTAAAATCTTCTACAC 865 Query 518007 ACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAG 518066 | | | || || | ||||||||||||||||| || || | |||| ||||| || | Sbjct 864 AGAAATTAACTAGTCTGTTATCAAAATCTTCACCACCTAAGTGTGTATCTCCTGCTGTTG 805 Query 518067 CTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCAC 518126 || | |||| ||| | |||||||||| | || | || ||||||| || || || | Sbjct 804 CTTTCACTTCGAATATACCATCTTCAATTGTTAACAAAGATACATCAAATGTACCTCCTC 745 Query 518127 CCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAA 518186 | | ||| ||||| | | ||| |||| | | ||||||| | |||||| || | Sbjct 744 CTAAATCGAAAATTAAAATATTTTTTTCCCCCTTTCCTTTTTTATGTAAACCATATGCTA 685 Query 518187 AAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTG 518246 || || ||||||||||||||||||||||||| ||||| | |||||||| | |||| Sbjct 684 TTGCTGCTGCAGTTGGTTCATTAATAATTCTCATTACATTCAATCCAGCAATGGTACCTG 625 Query 518247 CATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||||||| || ||||||||||| ||||||||||||||||| || |||||||| || |||| Sbjct 624 CATCTTTTGTTGCTTGTCTTTGAGAATCGTTAAAATATGCTGGTACAGTAATTACAGCAT 565 Query 518307 CAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTG 518366 ||| |||||| | | | || ||| ||| |||||| || ||||| ||||| Sbjct 564 TCTTTATGGATTTACCTAAAAATGCTTCTGCATTTTCTTTCATCTTTTGTAAAACCATTG 505 Query 518367 ATGAAATTTGTTCTGG--GGAAT-ATTGCTTGGATTCATTTTGATATGATACTTCAAAAT 518423 ||||||||| ||| || | ||| ||| ||| ||| ||| |||| ||||||| Sbjct 504 ATGAAATTTCTTCGGGATGAAATAATTTCTT---TTCCCCTTGGTATGTAACTTCAATCA 448 Query 518424 ATGGTTTATTACCAACA--TTA-ATAACTTTAAATGGCCAGTATTTCATATCTGATTGAA 518480 |||||| | | | ||| | | | ||| |||||||||| | |||||||| ||| | Sbjct 447 TTGGTTTCTCATCTACACCTGACTTTACTGTAAATGGCCAATGCTTCATATCACTTTGCA 388 Query 518481 CACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTG 518540 || | || |||| | || |||||||||| ||||||||||| | |||||| | Sbjct 387 CAGATGATTCTGTAAATTTCCTTCCAATTAATCTCTTTGCATCAAATACAGTATTTTCCG 328 Query 518541 GATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATG 518600 |||| | ||| |||| | || ||||||||||| || || ||||| || ||||| | Sbjct 327 GATTCCTAGCAACTTGGTTCTTTGCTGCATCTCCTATTAGTCTCTCTGTATCAGTAAAGG 268 Query 518601 AAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 518660 |||||| ||||| ||||| | ||| || ||||| || || ||||| || || || ||| Sbjct 267 CAACATACGATGGGGTTGTTCTATTTCCCTGATCGTTTGCTATAATGTCCACGTTTTCAT 208 Query 518661 TTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATTTT 518718 || ||||||||| ||||| | |||||||| || || |||||||| ||||| || Sbjct 207 TTCTCCATACACCAACACATGAGTACGTTGTTCCCAAGTCGATACCAATGGCAATATT 150 Score = 113 bits (124), Expect = 3e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 322240 TAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACC 322299 |||||| ||||| | ||||||||||||||||||||||| ||| | | |||| || || Sbjct 698 TAAACCATATGCTATTGCTGCTGCAGTTGGTTCATTAATAATTCTCATTACATTCAATCC 639 Query 322300 CGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTAC 322359 ||||| || | | ||| ||||||||||| || | || ||||||||||||||||| Sbjct 638 AGCAATGGTACCTGCATCTTTTGTTGCTTGTCTTTGAGAATCGTTAAAATATGCTGGTAC 579 Query 322360 AGTAATAACTGCTTTATTAATAGGTTT 322386 |||||| || || || || || | ||| Sbjct 578 AGTAATTACAGCATTCTTTATGGATTT 552 >seq428 Length=3574 Score = 389 bits (430), Expect = 3e-102 Identities = 1100/1666 (66%), Gaps = 63/1666 (4%) Strand=Plus/Plus Query 517069 AACTGCTTGTTTAACACTGTGAGTATAATTTTCTAATTCATTTTTAGAATCAACAGCAGC 517128 ||||| | ||| | ||| || |||||| ||||| | |||||| || || || | Sbjct 753 AACTGTTGCTTTCATACTTTGTAGATAATTGTCTAAATTATTTTTTGACTCCACTTTTTC 812 Query 517129 TTTTTTCTTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTG 517188 | || || ||||| | || |||| | || ||| || ||||||| | || || || Sbjct 813 TCTTAAATTTTTATCCTCGTCAGCAAACTTTTCAGCGTCGTTAATCATCTTTTCTATCTG 872 Query 517189 ATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA 517248 || | || ||||| || || ||| ||||||||||| || || || ||| Sbjct 873 TTCCTTTGATAATCTACCTTTATCATTGGTAATAGTAATTCCTTTAGACTTACCAGTTCC 932 Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || | || |||| | |||||||| ||| | | ||||||||||||||| Sbjct 933 TTTGTCTTCTGCTTCAACATGTAATATACCATTCTTATCAACAGTAAATGTGACTTCAAT 992 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || ||||| || |||||||| || || || | |||| |||| | || Sbjct 993 TTTTGGTACACCTCTTTGTGCAGGTGGAATACCAGATAATTCAAATTTTCCTAATAAATG 1052 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 ||||||||| || ||| |||||| || || |||| ||| || || | | ||| || Sbjct 1053 ATTATCTTTTGTTAATGCTCGTTCTCCTTCAAAAACTTGAATTAAGACAGCTGGTTGGTT 1112 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 517488 |||| |||||| | |||| | |||||||| || || ||| ||||| | ||| Sbjct 1113 ATCTTGATAAGTAGAAAATGTTTGTGATTTTTTTGTTGGTATAACTGTATTTCTTTTAAT 1172 Query 517489 AATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 517548 || | |||||||| ||||| | ||||| | ||| | || | ||||| ||||| | Sbjct 1173 AAGTTGAGTCATAATCCCACCAACAGTTTCAATACCTAAAGTCAATGGAGTTACATCTAA 1232 Query 517549 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 517608 || || | || ||| | || ||| || | || |||| ||||||| ||||| Sbjct 1233 TAAAACTACATCTTGTAATTCTTC---------TCCTAAAATAATACCTGCTTGGATAGC 1283 Query 517609 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 517668 ||||||||| || ||||||||||| ||||||| | |||| ||| ||||||||| || Sbjct 1284 AGCACCATAAGCTACAGCTTCATCTGGATTAATTCCTCTATTTGGTTCTTTACCATTAAA 1343 Query 517669 AAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 ||||| | || | |||| | ||||| ||||| | ||| || || ||||| || || Sbjct 1344 AAAATCTTTAATTATTTGTTGAATTTTAGGTATACGTGTTGAACCACCTACTAAGACTAT 1403 Query 517729 TTCATGCACCTGTGATTTATCCA-GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 ||| | || | | ||| | || ||||| ||| ||| ||||||| ||| ||||| | Sbjct 1404 TTCGT-CAATTTTACTTTTTTCATATTTTGCATCATCTAATACTTTTTTAACTGGTTCTA 1462 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | ||||||| ||||| | | ||||| ||||| ||||| || | || | Sbjct 1463 AAGTTTCTCTAAATAAGTCATCATTTAACTCTTCAAATTTTGCTCTTGTTAATGTTTCTG 1522 Query 517848 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGA 517905 | ||| | || || | | | || | |||||| || |||| | ||| | ||| Sbjct 1523 AAAAATTATGACCCTCTATAATATCTTCTATTTCAATTTGAG-TTGAAT-GAACAACAGA 1580 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 517965 || | ||| || ||| | || | |||| | || | | ||| | || || Sbjct 1581 TAAATTTCTTTTTGCTATTTCTACTTCTTTTCTTAATTTTTGAATAGCTCT--CTTATCA 1638 Query 517966 ATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 518023 ||| | |||| |||| | || | || |||| || | | || | || || Sbjct 1639 GTTCTTAGATCTACATTAT-TCTTTTTTTTAAATATT-TTTATAAAATAATCCATTACCC 1696 Query 518024 TT--ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081 || ||| |||||||| || || || | ||||| |||| || || ||||| ||||| Sbjct 1697 TTTGATCGAAATCTTCTCCACCTAAATGTGTATTACCTGCTGTTGCATATACTTCGAAAA 1756 Query 518082 GTCCATCTTCAAGAGACAA-AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 |||| |||| | |||| || | ||||||| ||||| ||||| | || | | Sbjct 1757 CACCATTATCAATA-ACAAGAATTGATACATCAAATGTTCCTCCACCTAAGTCGTATACT 1815 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 | || | | || |||| || ||||| | |||||| || ||||||||||||||| Sbjct 1816 AATATACTAGTT------TCTTCCTTCTTATCTAAACCATATGCTAAAGCAGCAGCAGTT 1869 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 |||||||||||||| | | || ||| | |||||||||| ||||||| ||||| || ||| Sbjct 1870 GGTTCATTAATAATACGTACAATATTTAAACCAGCAATTGTTCCTGCGTCTTTTGTAGCT 1929 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 |||||||| | ||| ||||||||||| || || |||| || |||| | ||| ||| Sbjct 1930 TGTCTTTGAGCATCATTAAAATATGCTGGTACTGTAACTACTGCATTTTTAACTGGTTTT 1989 Query 518321 CCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 518378 || || || | || || ||| |||||| || ||| | ||| | |||||||| Sbjct 1990 CC--TAAAAAGGATTGAGCTATTTCTTTCATCTTTTCTAATACCATAGCACTAATTTGTT 2047 Query 518379 CTGGGGAA----TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 518434 | || | | || | ||| || || || || |||| || || |||| || Sbjct 2048 CAGGTGCAAATGTAGTACTT---TTGTCCTTTATTTG-TACTCTAATATTTGGT---TTT 2100 Query 518435 CCAACATTAATAACT---TTAAATGGCCAGTATTTCATATCTGATTGAACACT--TTGGT 518489 || |||| | ||| | | | || | || | |||| || | ||| ||| | Sbjct 2101 CCTTCATTGTTCACTATGTCATAAGGTAATAATGTTCTATC--CTTTACTACTTCTTGAT 2158 Query 518490 CATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG 518549 ||| ||| | ||||| ||||||| ||| ||||||| | ||| | ||||| | | | Sbjct 2159 CATCAAATTTCCTACCTATTAATCTCTTTACATCAAACACAGTCTGTGTTGGGTGTAAAG 2218 Query 518550 CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC----TCTGTAAATGAAACA 518605 ||||| | |||||||| || |||| | |||| || || ||| || ||| Sbjct 2219 TAGCTTCTAACTTGGCTGCTTCACCAA----CTTTTCTTTCCCCATCAACAAAAGATACA 2274 Query 518606 TATGATGGAGTTGTGCGATTACCTTGATCATT-CGCAATAATTTCAACTTTACCATTTTG 518664 || |||||||| | ||||||||| || || |||| ||||| ||| | ||||||| Sbjct 2275 TAGGATGGAGTAATACGATTACCTAACTCGTTATTCAAT-ATTTCCACTCTTCCATTTTT 2333 Query 518665 CCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710 | ||||| ||||| ||| |||| ||||| | |||||| || ||| Sbjct 2334 GAACACACCAACACAGCTATAAGTCGTTCCCAGATCAATTCCTATA 2379 Score = 131 bits (144), Expect = 1e-24 Identities = 232/336 (69%), Gaps = 17/336 (5%) Strand=Plus/Plus Query 322059 TTAGAATATGATTCATTATCAAATAGTCAAAATCTTCTCCTCCCAAATGTGTATTACCAC 322118 ||| || || || ||||| | | || ||||||||||| || |||||||||||||| Sbjct 1676 TTATAAAATAATCCATTACCCTTTGATCGAAATCTTCTCCACCTAAATGTGTATTACCTG 1735 Query 322119 CTACTGCTAATG-TTCTAAATACTCCATTTGAGATATTCATTAACGAAACATCTAAAGTC 322177 || ||| || ||| ||| || ||||| ||| | | || ||||| || || Sbjct 1736 CTGTTGCATATACTTCGAAA-ACACCATTATCAATAACAAGAATTGATACATCAAATGTT 1794 Query 322178 CCAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttATTCCATTTTTCACTT 322237 || | |||||||| || || | || || ||||| || ||| || || Sbjct 1795 CCTCCACCTAAGTCGTATACTAATAT------ACTAGTTTCTTCCTTC---TTATC---- 1841 Query 322238 CCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAA 322297 |||||| ||||| | ||| || ||||||||||||||||| || | || || |||| Sbjct 1842 --TAAACCATATGCTAAAGCAGCAGCAGTTGGTTCATTAATAATACGTACAATATTTAAA 1899 Query 322298 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 322357 || |||||| | | | || || |||||||| || || |||||||||||||||||| Sbjct 1900 CCAGCAATTGTTCCTGCGTCTTTTGTAGCTTGTCTTTGAGCATCATTAAAATATGCTGGT 1959 Query 322358 ACAGTAATAACTGCTTTATTAATAGGTTTTTGTAAA 322393 || |||| ||||| || |||| |||||| |||| Sbjct 1960 ACTGTAACTACTGCATTTTTAACTGGTTTTCCTAAA 1995 >seq3920 Length=5462 Score = 203 bits (224), Expect = 2e-46 Identities = 830/1283 (65%), Gaps = 68/1283 (5%) Strand=Plus/Plus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCT-TGTT-ATCTGCTTCTTCAAA 517155 ||||| ||| ||||||||||| || ||||| | |||| |||| |||| | Sbjct 1891 TTTCTGCTTCGTTTTTAGAATCGGTT--AGATTTTTCTTGTGTTGATCTTTTTCTCTATT 1948 Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATT 517215 | || ||||||| || ||| | ||||||| |||| | || | || | | | | Sbjct 1949 TAATTCAGCTTCTTGAACCATCTTTTCAATTTCTTCTTTACTCAAACCACCACTACTTTG 2008 Query 517216 AGTAATAGTAATATTCTTGGATTTG-TTTGTTGATTTATCAGCGGCAGTCACATTAAGAA 517274 | |||||||| || ||| ||| ||||| ||||||| || | | |||| || Sbjct 2009 A---ATAGTAAT-TTGTTGTTTTTTATTTGTCATTTTATCAATAGCGGATATGTTAATAA 2064 Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 | |||| ||||| | ||| ||||| ||||||||||| || || ||||| | ||||||| Sbjct 2065 TTGCATTAGCATCAACATCGAATGTAACTTCAATTTGTGGAACACCTCTAGGTGCAGGTG 2124 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 | || || | |||| ||| | || | | |||||||| ||| | || || ||| | Sbjct 2125 GAATACCAACTAAATCAAAAGAGCCTAACATTTTATTATCACTAGCCATTTCTCTTTCTC 2184 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454 | | ||| || ||| ||||| ||||| ||||| | | || | ||||| | | Sbjct 2185 CTTGATAAACTTTAATACTAACTTGTGTTTGGTTATCGGCAGCTGTGGAAAATATTTGCG 2244 Query 517455 ATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTG 517514 |||| || || |||||||| ||||||| ||| | || || | | ||||||| | Sbjct 2245 ATTTCTTTGTTGGGATTGTTGTATTTCTATTAATTAATTTAGTAAATACACCACCTAAAG 2304 Query 517515 TTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCAT 517574 |||||| ||| | || | |||| | ||||| | || | | || || | |||| | Sbjct 2305 TTTCTATACCTAATGATAAAGGAATAACATCTAAAAGAAGTAAATCTTTTA---TTTC-T 2360 Query 517575 CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAG 517634 | ||| | || | || |||| ||||| ||||| | ||||| |||||||| | Sbjct 2361 CCTTTTAA--------AACACCTCCTTGTATAGCTGCACCTAAAGCAACTGCTTCATCTG 2412 Query 517635 GATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT--TAC 517692 | || ||| ||| | | || |||||||| |||| | | ||| ||| Sbjct 2413 GGTTCACACTTTTTGATGGGGAATT----TTGAAAAA-TTTGTTTTACTGTTTCTGATAC 2467 Query 517693 CTTAGGAATACGAGATGAT-CCTCCAACTAATACAATTTCATGCACCTGTGAT--TTATC 517749 ||| || || | | | || || |||||||| | ||||||| | | | || || | Sbjct 2468 CTTTGGCATTCTTG-TCATACCACCAACTAAGATTATTTCATTAA--TTTCATCCTTTTT 2524 Query 517750 CAGTTTTGAATCCAATAAAACTTTT-TCAACGGGTTCAAGACCCGCTCTA---AACAAGT 517805 | |||| ||| ||| || ||| ||| || |||| | | || | || |||| Sbjct 2525 AACATTTGCATCTT-TAATACATTTCTCACAAGGATCAATA---GTTCCATGTAATAAGT 2580 Query 517806 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA---------TCAA 517856 | ||| | |||||| |||||||||||||| | | | | || || || | Sbjct 2581 CATGACATAATTCTTCTAATTTAGCTCTAGTCA-ATTTAATTTGCAAATGTTTCGGTCCA 2639 Query 517857 TTCC--TTCGAACAAAGAA----TCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 || || | | || || | || || || |||||| ||| | |||| | Sbjct 2640 GTCTGATTAGCAGTAATAAATGGTAAATTTATTTC--AGTTTGTGTCTTACTTGATAATT 2697 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT-TTGCTGATTGATTC 517969 || |||||| ||| |||| |||| |||| |||| ||| || | ||| || Sbjct 2698 CAATTTTAGCTGTTTCTGCTGCTTCTCTTAATCTTTGTAAAGCTAATTTATCATTTTTT- 2756 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 ||||| | || | |||| |||| || ||| | | | || || || | | |||| Sbjct 2757 AAATCAATATTTTCTTTTTTCTTAAATTCTGATATAAAATATTCTAAAATTCTTTGATCA 2816 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 |||||||| ||||| || ||||| || || ||| |||||| || | || || Sbjct 2817 AAATCTTCCCCTCCTAAGGATGTATTACCATTTGTTGCTTTTACTTCAAATACACCTCCT 2876 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 || |||| || || |||| || ||||| || | ||| | | | || Sbjct 2877 AAAATTTCTAAAATAGATATATCAAATGTACCACCTCCTAAGTCATATAC---TGCA--- 2930 Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 ||| | || | | |||| || | ||| | || |||||||| || |||||||| ||| Sbjct 2931 ATTACCTTTCCATCACTTTTTTCTAATCCAAATGCTAAAGCAGCTGCTGTTGGTTCGTTA 2990 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 |||||||| || |||| | ||| |||||| | ||||||||||| || ||||||||||| Sbjct 2991 ATAATTCTTAATACATCTAAACCTGCAATTTTACCTGCATCTTTTGTTGCTTGTCTTTGA 3050 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAA 518329 ||||| ||||||||||| || || |||||||| || | | |||| | | || | |||| Sbjct 3051 GAATCATTAAAATATGCTGGTACTGTAATAACAGCTTGATGCACTTTTCTTCCTAAATAA 3110 Query 518330 GCGCTTGCCGTTTGTTTCATTTT 518352 ||| |||| ||||||||| Sbjct 3111 TTTTCTGCAGTTTCTTTCATTTT 3133 Score = 145 bits (160), Expect = 6e-29 Identities = 207/295 (70%), Gaps = 21/295 (7%) Strand=Plus/Plus Query 322085 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCTAATGTTCTAAATACTCCA 322144 ||||||||||| ||||| || |||||||||| | |||| | | |||||| || Sbjct 2814 TCAAAATCTTCCCCTCCTAAGGATGTATTACCATTTGTTGCTTTTACTTCAAATACACCT 2873 Query 322145 TTTGAGATATTCATTAACGAAACATCTAAAGTCCCAGCTCCTAAGTCATAAAC---AATT 322201 | | || | | | || | ||| || || ||| ||||||||||||| || |||| Sbjct 2874 CCTAAAATTTCTAAAATAGATATATCAAATGTACCACCTCCTAAGTCATATACTGCAATT 2933 Query 322202 ACGTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCT 322261 || || ||| || |||||| |||| || |||| | ||| ||| Sbjct 2934 ACCTTTCCATCACTTTTTT------------------CTAATCCAAATGCTAAAGCAGCT 2975 Query 322262 GCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGA 322321 || |||||||| ||||| ||| | | ||||||||||| ||||||||| | | ||| Sbjct 2976 GCTGTTGGTTCGTTAATAATTCTTAATACATCTAAACCTGCAATTTTACCTGCATCTTTT 3035 Query 322322 GTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTAT 322376 ||||||||||| || | |||||||||||||||||||| |||||||| |||| || Sbjct 3036 GTTGCTTGTCTTTGAGAATCATTAAAATATGCTGGTACTGTAATAACAGCTTGAT 3090 >seq1378 Length=4202 Score = 165 bits (182), Expect = 6e-35 Identities = 1003/1572 (64%), Gaps = 83/1572 (5%) Strand=Plus/Plus Query 398859 CGTGATTATAATC-TAACCATTTTCGGATTCAGGACTCTAGAAAAATCTTATCTTAAAAG 398917 ||||||| |||| | | ||||| ||||| | ||| |||||| ||||||| | | | Sbjct 619 CGTGATTTTAATTATGATTATTTT-GGATTTAAGACATTAGAAAGATCTTATTTATTACG 677 Query 398918 AATCAACaaaaaaaTTGTTGAACGTCCTCAACACTTATTTATGAGAGTAGCTATTACACT 398977 || ||||| |||||| ||||| | || ||||| ||||| ||||||||| | || | Sbjct 678 TATTAACAACAAAATTATTGAAAGACCACAACATTTATTAATGAGAGTATCGATAGGTAT 737 Query 398978 CCATTACAGGAAAAATGATCTCGACAGGATATTTGAAACTTATAAATATTTATCTAAAGG 399037 ||| | ||||| | || | ||| ||||||||| | | | ||| || Sbjct 738 ACAT------ATTGATGATATAGATAAAGCATTAGAAACTTATCATTTGATGTCTCAAAA 791 Query 399038 ATATTTTACTCACGCAACACCTACATTATTTAATGCTGGTACAACACATGAACAACTTTC 399097 |||||| ||||| || ||||| |||||||||||| ||||||| | ||| | || Sbjct 792 ATATTTCACTCATGCTACACCAACATTATTTAATTCTGGTACTCCTAGACCCCAAATGTC 851 Query 399098 AAGTTGTTTTTTATTGGGTATTGGT---GATTCTCTTGAAGAAATCAGTGAATGTTGGAA 399154 ||||||| | || ||| ||||| | |||| || ||| || Sbjct 852 GTCTTGTTTTCTTTTATCTATGAAATCAGATTCAATAGAAGGTATATTCGAAACACTAAA 911 Query 399155 AGAATGTGCTTTAATCAGTAAACATGCAGGAGGAATTGGAATACATATGACTA-ATATTA 399213 | | |||||| | || |||||| || || || || || || | || | |||| | Sbjct 912 ACAGTGTGCTCTTATTAGTAAAACAGCTGGTGGTATAGGTGTAGCAGT-ACAAGATATAA 970 Query 399214 GAGTTGAAGGAGCATATAT---AGCTTCAACACAAGGAGAAGCAGGTGGTTTAAGAGTTT 399270 ||| || | ||||| || | | | | ||| || ||| | | | Sbjct 971 GAGGACAAAATTCGTATATTAGAGGTACGA---ATGGAATTTCAAATGGACTCGTACCTA 1027 Query 399271 TGACTA---TTTTCAATGATATTTCAAGATACGCAAATCAAGGTGGT---AAACGACCCG 399324 || | |||| ||||||| | ||||| | | ||||||| || ||| || | Sbjct 1028 TGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAAGGAGGAGGAAAAAGAAAAG 1087 Query 399325 GTTCTTTTGCTATTTTTATTGAACCGTGGCATGGAGACATATTCTTTTTTCTAGATCTCA 399384 ||||||||||| ||| ||||||||| |||||| ||| |||||| ||| ||||| | | Sbjct 1088 GTTCTTTTGCTGTTTATATTGAACCATGGCATTCAGATATATTCGAATTTTTAGATTTAA 1147 Query 399385 AGAAAAATACTGGAGCAGAAACAGAAAGAGCCAGAGATTTATTTT-TG-GGTTTGATGAT 399442 |||||| ||| |||| | |||||| |||||||| |||| || ||||| | | Sbjct 1148 GAAAAAATCATGGCAAAGAAGAATTAAGAGCAAGAGATTTGTTTTATGCTGTTTG--GGT 1205 Query 399443 TAATGACATTTTCATGGAAAGAGTTTATAAAGACGATGTTTGGTCATTAATGTGTCCGTC 399502 | |||| | |||||| ||||||| | || | | |||| | ||||||||||| Sbjct 1206 TCCTGACTTGTTCATGAAAAGAGTAAAAGAAAATCAAAATTGGACTTTAATGTGTCCAAA 1265 Query 399503 TCAATGTCCTAATCTTCTCAATAAATACGGAGACGAATTCACCAAAGAATATCTTAAATA 399562 | |||| || || | | || || || ||||| ||| |||| |||| || Sbjct 1266 TGAATGCCCAGGACTAAGTGAAACATGGGGTGAAGAATTTGAAAAATTATATGTTAAGTA 1325 Query 399563 TGAAAGTGAAGGTATTTATTTGAAACAAA----TAAGAGCTATTGATTTATGGTT--CAA 399616 |||| ||| | | ||| | || ||| || ||| ||||||||||| | | Sbjct 1326 TGAA---GAA-GAAAATATGGGCAAAAAAACTGTATTAGCACAAGATTTATGGTTTGCTA 1381 Query 399617 GATTATGGAGTCCCAAATTGAGACAGGAGTTCC--GTATGTTATGTTCAAAGATGCGATT 399674 |||| ||| |||||||| ||||| ||||| |||||||| | ||||| | | Sbjct 1382 TATTACAAAGT--CAAATTGAAACAGGTGTTCCATATATGTTATAT--AAAGACTCATGT 1437 Query 399675 AATGACAAATCAAATCAAATTAATATTGGTGTTGTTAATGGTTCAAATTTATGTTGTGAA 399734 |||| ||||| ||||||| ||| | ||| | | || || ||||| ||||||||| Sbjct 1438 AATGCTAAATCGAATCAAAAAAATCTAGGTACTATCAAATGTAGTAATTTGTGTTGTGAA 1497 Query 399735 ATTGTGGAAGTATCCGACA-AAAATAATTTCTCAGTATGTAATTTATCATCAATT--TGT 399791 ||| | | ||||| | || || | | | ||||||||| | | || ||| | | Sbjct 1498 ATTATTG-AGTATACTTCACCTGATGAAGTTGCTGTATGTAATCTTGCTTCTATTGCTTT 1556 Query 399792 CTGCCGAGATTTGTTAAAATTATTGATGAAGTCCCAACTTTCAATTACCAAAAATTATTC 399851 ||| | |||||| | ||| ||| | || |||| ||||||||| Sbjct 1557 ATGC--AAATTTGTGGA----CTTG--GAAAAAAAAGAATTTAATTTTAAAAAATTATAT 1608 Query 399852 AAGATTAGTCGTATTCTCACTCGCAATCTCAATAATATTATTGACATTAATTTCTATCCT 399911 | |||| ||| | ||| | ||||| |||| || ||||| | |||| || ||| Sbjct 1609 GAAATTACAAAAATTATTACTAGAAATCTAGATAAAATAATTGAAAGAAATTATTACCCT 1668 Query 399912 CTCGATAAAACTCGGATTACCAATCTTCGTGATCGTCCTATTGGTATTGGAGTTCAGGGA 399971 | | || | | | || | || | ||||| ||||| || |||||||| Sbjct 1669 ATTAAAGAAGCCAAAGTGTCTAACAAGAGGCATAGACCTATAGGTATAGGTGTTCAGGGG 1728 Query 399972 TTAGCTGAT--GTATTTGCTATGTTTAAGA-CTCCTTTTGATTCGGAAATTGCTCGTGAT 400028 ||||| ||| | | |||| ||| ||| ||| | ||| ||||| ||| || Sbjct 1729 TTAGCAGATACTTTTATGCT---TTTGAGATATCCCTATGAGTCGGATGAAGCTAAAGAG 1785 Query 400029 CTCAATCGTAAAATTTTCGAAACAATTTATTATGGAGCTTTAACAGAATCCAATAAACTT 400088 | ||| | | ||| |||||||| || || |||| |||||| | || | || | Sbjct 1786 TTGAATAGAAGAATATTCGAAACCATGTACTATGCTGCTTTAGAAATGTCTATGGAATTA 1845 Query 400089 GCTAGAGAAT-TTGGTACATATCAAACTTATCAAGGAAGTCCTATTTCTCAAGGAAAATT 400147 || | || | ||| | ||| || ||||||| || ||||| | |||||| | | Sbjct 1846 GC-AATGATTCATGGACCTTATGAATCTTATCAGGGTAGTCCAGCTAGTCAAGGTATTCT 1904 Query 400148 CCAATTTGATCTTTGGAAT--TTCGATAAATCACAATTGAGCGGAATGTGGGATTGGGAA 400205 ||||||||| | |||||| | || || || | | ||||| |||||| ||| Sbjct 1905 ACAATTTGATATGTGGAATAAAAAGGTAGATAGTAAGT-ACTGGAAT-TGGGAT---GAA 1959 Query 400206 CTTTTGCGTCAAGAAATTTTAAATCATGGTGTTCGTAATAGTCTAGTTACAACCTG---- 400261 || || ||| |||| || |||||| | | ||| ||| |||| || || Sbjct 1960 CTAAAGC-TCA--AAATACGTAAACATGGTTTAAGGAAT--TCT--TTACTACTTGCACC 2012 Query 400262 TATGCCAACTGCAAGTACTTCTCAAATTATGGGATGGAATGAATGTATTGAACCTTATAC 400321 |||||||||||| ||| |||||||| | || || |||| ||||||||||||| Sbjct 2013 TATGCCAACTGCTTCTACATCTCAAATACTTGGGAATAACGAATCCTTTGAACCTTATAC 2072 Query 400322 AGAAAATATTTATTCAAGAAGTACTATGGCTGGAGAATATTTTGTGATTAATAAACATCT 400381 || ||||||| ||||| | || |||||||| |||||| |||| ||| | Sbjct 2073 TAGTAACATTTATTATAGAAGAGTTTTGAGTGGAGAATTTTTTGTCGTTAACCCTCATTT 2132 Query 400382 CATAAAAGATCT 400393 |||||||||| Sbjct 2133 GTTAAAAGATCT 2144 >seq1654 Length=3355 Score = 109 bits (120), Expect = 4e-18 Identities = 129/175 (74%), Gaps = 10/175 (6%) Strand=Plus/Plus Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862 || |||| ||||||||||||||| || |||||||||||| | || ||||||||||||||| Sbjct 1420 GTTGATTTTTCTTCTCCAAATATAGCCAAAGAAATGCATGTAGGTCATTTAAGATCAACT 1479 Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGA-----AATGTGTGGACACGATGTTTATC 870917 || || ||||| ||| ||||| | || || | ||| | |||| | Sbjct 1480 ATAATAGGTGATAGTATATGTAGAATTTTCGAGTTTTTAAATGTTAATACGA-----AAA 1534 Query 870918 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATAT 870972 | || |||||| | |||||||||||||| ||||| || ||| |||| |||||| Sbjct 1535 GAATAAATCATATTGGTGATTGGGGAACACAATTTGGAATGATAATAAATTATAT 1589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780461638652620