Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq260 517 1e-141 seq1378 280 2e-70 seq428 206 3e-48 seq1502 188 9e-43 seq1394 113 6e-20 seq1207 111 2e-19 seq3920 100 4e-16 seq694 93.3 5e-14 >seq260 Length=2304 Score = 517 bits (572), Expect = 1e-141 Identities = 1122/1654 (68%), Gaps = 44/1654 (3%) Strand=Plus/Minus Query 6517 ATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTC 6576 ||| || |||||||| |||| ||| | || || | ||||| | || |||||| || Sbjct 1787 ATAGCAATAGTTTTCTAGACTATTTCTTGCTTCAATTCTTTTCTTATTCTCTTCATCCTC 1728 Query 6577 ATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCC 6636 ||||||| ||||| ||||| | ||||| ||||| ||||| ||||| || || Sbjct 1727 TGCTTTATATTTTTCTGCATCATTAACCATACGATCAATTTCTTCAGGGGATAACCTACC 1668 Query 6637 CTTATCATTCGTAATCGTAATCT--TTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||||||| ||||| ||||| | ||| | ||| |||| | ||| || |||| | Sbjct 1667 CTTATCATTGGTAATAGTAATATGATTTTG--TTTTCCCGTGCTCTTCTCAACAGCTGTA 1610 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 ||||| ||||| ||||||||||| | ||| ||| | || | |||||||||| ||| Sbjct 1609 ACATTTAAAATTCCATTTGCATCTATATCAAACGTAACTTCAATTTGTGGTACTTTCCTA 1550 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCC--T 6812 || || | ||| ||||| ||||| |||| |||| | ||| | ||||| | | | Sbjct 1549 GGGGCAGGTGGTATACCATCTAAATGAAATTTACCTAACAAATTATTATCTTTTGTTAAT 1490 Query 6813 TCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTG 6872 || | ||| |||||||| |||| ||| ||| | ||||| ||||| ||| | Sbjct 1489 GCT--CTTTCTCCTTCATATACTTGGATTAACACACCTGGTTGGTTATCAGCATACGTCG 1432 Query 6873 AGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAA 6932 |||||||| ||| || | |||||| || |||||||| ||| | ||||||| Sbjct 1431 TAAAGATTTGACTTTTTTTTGCTGGAATAGTTGTATTTCTTTCAATCAATTTTGTCATAA 1372 Query 6933 TACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTC-ACGTCCAAGAGTAACAGGTCT 6991 |||||| |||||| | || | || | ||| | || || || | || | ||| Sbjct 1371 CACCACCAGCAGTTTCTAAACCTAAGGATA-AGGAGCATACATCTAATAACAATAAATCT 1313 Query 6992 TGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCG 7051 ||||||| | | | ||||||| ||| || || ||||| || | || || ||||| Sbjct 1312 TGAACAGCATTGGACTGATCACCCGATAATATTGCTGCTTGTACTGCTGCACCATATGCT 1253 Query 7052 ACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC--GATA 7109 || || ||||| |||||||| | | || |||||| ||||||||| | || ||| Sbjct 1252 ACAGCTTCATCTGGGTTAATAGATCTACATGCTTCTTTGCCGTTAAAAAATTCTTTGATT 1193 Query 7110 ACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT--CAC 7167 | || | ||| || || || |||||||| || ||||| || ||||| | ||||| ||| Sbjct 1192 A-ATGT-TTGTATCTTAGGAATTCGTGTTGAACCACCAACTAAAACAACTTCATGTACAC 1135 Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG 7227 ||| |||||| ||| | | ||| | ||| || || ||| | | || | | | Sbjct 1134 TTTT--TTTATCCATCATAGCATCTTTTAAGACTTTCTCTACTGGTACTA-ACGTATCCC 1078 Query 7228 -GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGA----AA 7282 ||| |||| ||||| | || ||||| | ||| | || | ||| || | || Sbjct 1077 TGAAATAGTCAATACATAACTCTTCAAATCTTGCTC---TACTTACTGT-TACACTATAA 1022 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 || | || || | | ||||||||||| ||||| | ||||| | || || ||||| Sbjct 1021 TCTATACCTTCAAAAAGGGAATCAATTTCGATGGTAGCTTGTGTAGAGGATGACAACGTA 962 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 || || || | ||||| |||| ||| | | | || | || || | | Sbjct 961 CGTTTGGCCCTTTCACATTGTGTTCTTAACCTTCTTAATGCTCTACTATTTTTTGATAAA 902 Query 7403 TCTTT---CTTATGTTTACGTTTAAACTCTTC---AGAGAAGTGTCGAAGGAGTCTCGAA 7456 ||||| | ||| ||| | ||||| ||||| | |||| | || ||||| | Sbjct 901 TCTTTACCCCTATTTTTTCTCTTAAAATCTTCTACACAGAAATT---AACTAGTCTGTTA 845 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || |||||||||||||| ||||||||||| || || || ||||| ||||| || ||||| Sbjct 844 TCAAAATCTTCACCACCTAAGTGTGTATCTCCTGCTGTTGCTTTCACTTCGAATATACCA 785 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| ||||||| || |||||||| ||||| || || | || ||||| | | Sbjct 784 TCTTCAATTGTTAACAAAGATACATCAAATGTACCTCCTCCTAAATCGAAAATTAAAATA 725 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | || | | | || |||| | ||| || || || || || || ||||||||| Sbjct 724 TTTTTTTCCCCCTTTCCTTTTTTATGTAAACCATATGCTATTGCTGCTGCAGTTGGTTCA 665 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 |||||||| | | ||| |||| |||||||| || | |||||||| || ||||||| Sbjct 664 TTAATAATTCTCATTACA-TTCAATCCAGCAATGGTACCTGCATCTTTTGTTGCTTGTCT 606 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| ||||||||||| || || || || || | || || | | | | ||||| | Sbjct 605 TTGAGAATCGTTAAAATATGCTGGTACAGTAATTACAGCATTCTTTATGGATTTACCTAA 546 Query 7756 ATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 | | | ||| || | |||||||| ||| |||| |||||| |||||||| ||||| | Sbjct 545 AAATGCTTCTGCATTTTCTTTCATCTTTTGTAA-AACCATTGATGAAATTTCTTCGGGAT 487 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 ||| |||| |||| || | | |||||||||||| ||||| || | |||| | Sbjct 486 GAAATAATTTCTTTTCCCCTTGGTATGTAACTTCAATCATTGGTTTCTCATCTACACCTG 427 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 | || || | | ||||| |||||||| ||| || | || | ||| || | Sbjct 426 ACTTTACTGTAAATGGCCAATGCTTCATATCACTTTGCACAGATGATTCTGTAAATTTCC 367 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 |||| || | | |||||||||||| || || |||| || ||| | || |||||||| Sbjct 366 TTCCAATTAATCTCTTTGCATCAAATACAGTATTTTCCGGATTCCTAGCAACTTGGTTCT 307 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 | || || || || || || | || || || ||||| || || ||||||||||| | Sbjct 306 TTGCTGCATCTCCTATTAGTCTCTCTGTA---TCAGTAAAGGCAACATACGATGGGGTTG 250 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 ||| ||| || || ||||| || ||||| || ||| || ||| ||| || || || | Sbjct 249 TTCTATTTCCCTGATCGTTTGCTATAATGTCCACGTTTTCATTTCTCCATACACCAACAC 190 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | || ||||||||||| || || ||||| || || Sbjct 189 ATGAGTACGTTGTTCCCAAGTCGATACCAATGGC 156 >seq1378 Length=4202 Score = 280 bits (310), Expect = 2e-70 Identities = 1098/1715 (64%), Gaps = 25/1715 (1%) Strand=Plus/Minus Query 104470 TGGTCTATATACACACCTCTATCCGCCGCCATATCGATGATTGTTTTTTGACTCATTTCC 104529 ||||| ||| | || || | ||| || ||||| ||||| || | ||||| | |||||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 104530 CATACGGTTTTATACAATTCCTTAAGATCATCGGGTATATCAATAATGTTTTGAACAGAC 104589 || || ||||| || | |||||| | ||||| |||||| ||| | || | || ||| Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 2202 Query 104590 CCATTTGCCTTCACCATAA---GATCTTTCATTTCCTTCGACC-AGAGTCCACGTTCTTT 104645 ||||| | | | || | | | |||||| || |||| || | | || | || Sbjct 2201 CCATTA---TGCGCAATTAACTGCTGTTTCATATC-TTCGTCCCATAAGCCCCTATCGAA 2146 Query 104646 CAAATCGTTTACTAAATGTTTGTTTACGACGACAAATTCACCCGCGAGTGTTCGTCTCAA 104705 | ||| |||| ||||| ||| ||||| | |||||| || | || ||| | Sbjct 2145 TAGATCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATA 2086 Query 104706 ATAGATATTGGTCGTATACGGTTCGAAACACTCGTTGTTCCCTAAAATCTGGGATGTGGA 104765 ||| || || | ||||| ||||| || | ||||| ||||| | || || ||||| || Sbjct 2085 ATAAATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGA 2026 Query 104766 TGCGGTAGGCATAGGTGCAAGAAGAAGACTATTCATAGTTCCTTTCTTAACAAGTTTACG 104825 || || |||||||||||||| || | | |||| | || | ||| | ||| | Sbjct 2025 AGCAGTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAG 1966 Query 104826 CATGG---CATTCCAATCGTATCGACCACTAAACTT-TGGGTCTCGATCCCACATATCGA 104881 | | ||| ||||| || | ||| | | | | | || ||||||||| | Sbjct 1965 CTTTAGTTCATCCCAAT----TCCAGTACTTACTATCTACCTTTTTATTCCACATATCAA 1910 Query 104882 ATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAGGACCGTACATTT 104941 |||| |||||||||| |||| || |||| | | | ||||||||| || | || Sbjct 1909 ATTGTAGAATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAATCA 1850 Query 104942 CGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGAATATATCAATGT 105001 || | ||| ||| ||| | | || | ||| || ||||||||||| | | Sbjct 1849 TTGCTAATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCTAT 1790 Query 105002 TGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAAACACGTCAGCGA 105061 | | | | | | ||| || || | | | ||| || | ||||| || || | Sbjct 1789 TCAACTCTTTAGCTTCATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTA 1730 Query 105062 GACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTTTCCCGTTTTCGG 105121 ||||||||||| ||||| || ||||| || | | | || || ||| | | || Sbjct 1729 ACCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAA 1670 Query 105122 TTGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAACCATTTTCGTAACAC 105181 | |||||| | ||| | ||||| | || | || || | |||| ||||| |||| Sbjct 1669 TAGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTT 1610 Query 105182 GATGTAACTCTTCATGGTTAAACTCGTTCTTCTCGACATCAACGTATTTTGGTAACGCGA 105241 || ||| | || | ||||| || || || || | || || |||| ||| || | Sbjct 1609 CATATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAA 1550 Query 105242 TTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAACTCCAGAATTTCTGTAC 105301 | || || ||||||||||| || ||| || ||| |||| | |||||| || Sbjct 1549 TAGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAAC 1490 Query 105302 ACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACTTTTCATTACACGCGT 105361 ||||||| |||| || ||||| | | ||| || ||||| || ||||||| | || Sbjct 1489 ACAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGT 1430 Query 105362 CTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATT-TAATAATTGCTTTCCAA 105420 |||| || | ||||||||| || |||||| |||| || ||||| | || ||| Sbjct 1429 CTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATA-TAGCAAACCAT 1371 Query 105421 ATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTCGTATTTCTCGTAAAGA 105480 | || ||| |||| ||| | | ||| ||| ||| || || | || | Sbjct 1370 AAATCTTGTGCTAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATAAT 1311 Query 105481 TCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCC--TGATCAGGACAAAACA 105538 | |||||| |||| ||| || || | | | | | | | | || ||||| | | Sbjct 1310 TTTTCAAATTCTTCACCC--CATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTA 1253 Query 105539 ATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTG 105598 | | |||||| || || || | |||||||||||| || |||| ||| | || Sbjct 1252 AAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCAT 1193 Query 105599 AAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAAT 105658 |||| | |||| || ||||| | || ||||| | | || | ||| | Sbjct 1192 AAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATT 1133 Query 105659 CGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTAC---GACGCC 105715 ||| ||||| | ||||||||||| | ||| || |||| ||| ||||| | | | Sbjct 1132 CGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTC 1073 Query 105716 CCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCAT 105775 | |||||| |||||||| || || ||| | |||| |||||| || | | |||| Sbjct 1072 CTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCAT 1013 Query 105776 CGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTA 105835 || ||||||| || || | ||||| || || | | | | || ||| || || || Sbjct 1012 TTGAAATTCCATTCGTACCTCTAATATACGAATTTTGTCCTCTTATATCTTGTACTGCTA 953 Query 105836 ACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATAC 105895 || ||||| ||||| ||||| ||| | ||||||| ||||| ||| ||| | |||| Sbjct 952 CACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATAC 893 Query 105896 CGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTG 105955 | || || |||| || | | | || ||||| || |||||||| ||||| || | Sbjct 892 CTTCTATTGAATCTGATTTCATAGATAAAAGAAAACAAGACGACATTTGGGGTCTAGGAG 833 Query 105956 TACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGT 106015 |||||| ||| || | |||||||| |||||| |||| | || || | | | | Sbjct 832 TACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGAT 773 Query 106016 ATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAGA 106075 | ||||| | | | ||| ||||| | ||| ||||| || | || | ||| | | Sbjct 772 AAGTTTCTAATGCTTTATCTATATCATCAATATGTATACCTATCGATACTCTCATTAATA 713 Query 106076 GATATTGGGGTGTTTCAATAATTTCACCGTCAATTTTCTGGAGATACCCTTTTTCAAGTG 106135 || ||| ||| |||||||||||| || ||| | ||| | |||| | || Sbjct 712 AATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAATG 653 Query 106136 TTTTTAAACCAAAATACCCAAACTCAAAATCACGT 106170 | || || |||||||| || | | |||||||||| Sbjct 652 TCTTAAATCCAAAATAATCATAATTAAAATCACGT 618 >seq428 Length=3574 Score = 206 bits (228), Expect = 3e-48 Identities = 426/627 (68%), Gaps = 15/627 (2%) Strand=Plus/Plus Query 6538 ATTCTTCGCCTCGACCTTTTTCGCGTAC-TTTTCATCTTCATCTTTATACTTTTCCGCAT 6596 ||| || | ||| || |||||| | || |||| ||| || || | ||||||| || | Sbjct 792 ATTTTTTGACTCCAC-TTTTTCTCTTAAATTTTTATCCTCGTCAGCAAACTTTTCAGCGT 850 Query 6597 CTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAA 6656 | | | ||||||||| || | ||| || |||||||| || |||||||| ||||| |||| Sbjct 851 CGTTAATCATCTTTTCTATCTGTTCCTTTGATAATCTACCTTTATCATTGGTAATAGTAA 910 Query 6657 TCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCAT 6716 | || || ||||| | | || ||||| || |||| || |||||||| || Sbjct 911 TTCCTTTAGACTTACCAGTTCCTTTGTCTTCTGCTTCAACATGTAATATACCATTCTTAT 970 Query 6717 CAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTA 6776 ||||| || | || | ||||| |||| ||| || |||| | ||||||||| | || Sbjct 971 CAACAGTAAATGTGACTTCAATTTTTGGTACACCTCTTTGTGCAGGTGGAATACCAGATA 1030 Query 6777 AATCAAATGTACCAAGTAAACTGTTATCCGTCGCC--TTCTTACGTTCACCTTCATAGAC 6834 | |||||| | || | |||| ||||| | | | || ||||| |||||| | || Sbjct 1031 ATTCAAATTTTCCTAATAAATGATTATCTTTTGTTAATGCT--CGTTCTCCTTCAAAAAC 1088 Query 6835 TTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGA 6894 || |||| || || ||||| |||||||| || || || ||||| ||| || | Sbjct 1089 TTGAATTAAGACAGCTGGTTGGTTATCTTGATAAGTAGAAAATGTTTGTGATTTTTTTGT 1148 Query 6895 TGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCC 6954 ||| || |||||||| ||||| | |||||||| ||||| | |||||| | || Sbjct 1149 TGGTATAACTGTATTTCTTTTAATAAGTTGAGTCATAATCCCACCAACAGTTTCAATACC 1208 Query 6955 AAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACC 7014 | || || || || || || || | | | ||||| | |||| | ||| | Sbjct 1209 TAAAGTCAATGGAGTTACATCTAATAAAACTACATCTTGTA---ATTCTTCTCCTAAAA- 1264 Query 7015 CGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGT 7074 ||| | | ||||||| | || || || || || || ||||| || ||||| Sbjct 1265 ---TAATAC--CTGCTTGGATAGCAGCACCATAAGCTACAGCTTCATCTGGATTAATTCC 1319 Query 7075 TTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCG 7134 | |||| |||||||||| |||||| |||| | |||||||||||||| || || || Sbjct 1320 TCTATTTGGTTCTTTACCATTAAAAAAATCTTTAATTATTTGTTGAATTTTAGGTATACG 1379 Query 7135 TGTCGATCCACCGACCAAAACGATTTC 7161 ||| || ||||| || || || ||||| Sbjct 1380 TGTTGAACCACCTACTAAGACTATTTC 1406 Score = 123 bits (136), Expect = 3e-23 Identities = 250/368 (68%), Gaps = 16/368 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| ||||| || ||||||| || || || || | ||||| || | ||| Sbjct 1701 ATCGAAATCTTCTCCACCTAAATGTGTATTACCTGCTGTTGCATATACTTCGAAAACACC 1760 Query 7516 TCCTTCAATGTTTAACAA----CGAAACATCAAACGTACCACCACCCAGGTCAAAAATGA 7571 |||| |||||| || |||||||| || || ||||| | ||| | | | Sbjct 1761 ATTATCAA----TAACAAGAATTGATACATCAAATGTTCCTCCACCTAAGTCGTATACTA 1816 Query 7572 GTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 || | || |||| |||||||| | ||| || || | ||| || || |||| Sbjct 1817 ATATACTAGT------TTCTTCCTTCTTATCTAAACCATATGCTAAAGCAGCAGCAGTTG 1870 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 |||||||||||||||| | | || | |||||||| ||| | || ||||| || |||| Sbjct 1871 GTTCATTAATAATACGTACAATATTTAAACCAGCAATTGTTCCTGCGTCTTTTGTAGCTT 1930 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 ||| ||| | ||| ||||| || || || || || || || || | | ||| || | Sbjct 1931 GTCTTTGAGCATCATTAAAATATGCTGGTACTGTAACTACTGCATTTTTAACTGGTTTTC 1990 Query 7752 CGAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 | | | | |||| || || |||||||| ||| ||| ||||| | ||| | |||| Sbjct 1991 CTAAAAAGGATTGAGCTATTTCTTTCATCTTTTCTAA-TACCATAGCACTAATTTGTTCA 2049 Query 7811 GCCGCAAA 7818 | ||||| Sbjct 2050 GGTGCAAA 2057 >seq1502 Length=19671 Score = 188 bits (208), Expect = 9e-43 Identities = 558/846 (66%), Gaps = 27/846 (3%) Strand=Plus/Minus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 |||||| | || | ||||| ||||| |||||||| || | || ||||| ||||| Sbjct 5891 ATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGAGATATCAAATCCAT 5832 Query 115122 AAAATCAAAGGGATTTTTCGTGTTCCAGATTTTATTGTGACCCACTTGTTTTGATAATCG 115181 ||| ||| |||||||| | | ||| ||| | || | || | | |||| Sbjct 5831 CCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCTAAACATTCTAACAATCT 5772 Query 115182 ATCCGCAACATATTCGATATACTCCGACATTTTACCGGAATTCATACCTATGAGACTACA 115241 ||| || ||| |||| || || | |||||| | |||||||| ||||| | ||| Sbjct 5771 ATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCATTCCTATCAAGTCACA 5712 Query 115242 CGGAAGTGCGTCCGTAATGAATTCTTTTTCGATTGAAACGGCGTCTCTTATAAT-TTCTT 115300 || | | || || ||| | ||| | | || || ||| ||| ||| |||| Sbjct 5711 AGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTGCTTCTTTTACAATATTCTG 5652 Query 115301 --CAATTGTATTTTGAGATGGTTTGTTTTTTAACATGTTGAATAATTCAACCGC-AAATT 115357 ||||| | || | | ||| |||| | || | ||| || ||| | ||| | Sbjct 5651 AACAATT---TCTTCTGGTAATTTATTTTCCAGCAGACTATATA-TTAAACAGTTAAAGT 5596 Query 115358 CTTGGTGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACC-TGGAAGT 115416 || || | |||||||||| ||| || | ||||||||||||| || || || || | Sbjct 5595 CTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCATGTAATT 5536 Query 115417 AACCCTCTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCA 115476 | | | ||||| ||||| |||||||||||||||||||| || ||||||||||| Sbjct 5535 TATTTTGT-TTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAATATACCTTCT 5477 Query 115477 ACACACGCAAAGGCTAATAAACGTTCAGCAAATGGTCGTTTCTTATCAAACCACTTCATA 115536 ||||| ||| |||| || ||||| ||||| | | |||| || ||| || | Sbjct 5476 ACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGGTATTATTAATCCATTTGGCA 5417 Query 115537 GCCCATTTCGCCTTTCTTTCGATACACGGAATTGTTTGAATTGCTTCGAATAATTGT--- 115593 ||||| || || ||| | | || || ||| ||||| | ||||| | | Sbjct 5416 GCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGAAATAAATTTAAT 5357 Query 115594 ---TTCTTTTCGCTAGAATTTTTTATATACTTGTCTATGAGTTTACTGTACGTTTCACCG 115650 | |||||| || |||||||| || || || | |||||| ||||| Sbjct 5356 CGCTCCTTTTC------ATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAA 5303 Query 115651 TGTACCATTTC-ATTGTGAGATTGATAGGCATAAAATGATCGAGCCTCCGTAAGTTGTAT 115709 || | | || | || | |||| | | ||||||| ||| ||||| | ||| | Sbjct 5302 TGAATATTCTCCACTGCTAT-TTGAAAAGAATAAAATTTCTTAGCTTCCGTTATTTGAAC 5244 Query 115710 TTCATCTGCAAAATT-ATTATTTATATTTTCAAAAACTATACCATCAGAACCAGCaaaaa 115768 ||| ||| |||||| | || | |||||| |||||||| |||||| | ||||||| Sbjct 5243 TTC-TCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAA 5185 Query 115769 aaGCTAAAATATATTTTATAAAATGTTTTTCATTATCACTTAATTCATTCCAATCATCCA 115828 | ||||| | || ||||||||||||||||||||| ||| |||||| | |||| | || Sbjct 5184 ATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCA 5125 Query 115829 TATCTTTGGAAAAGTCTATCTCTTCAGCGGTCCAATTTGACATTTGGGCCTTTTTATACA 115888 ||| | || || ||||||||||| || |||||| ||| || || |||||||| | Sbjct 5124 AATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATA-A 5066 Query 115889 AAGTCC 115894 |||||| Sbjct 5065 AAGTCC 5060 >seq1394 Length=7918 Score = 113 bits (124), Expect = 6e-20 Identities = 312/474 (66%), Gaps = 6/474 (1%) Strand=Plus/Plus Query 183109 AATATTGTGTTTAATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACC 183168 |||||| | |||||||||| |||| | || ||| |||| | |||| || || Sbjct 4441 AATATTATTAATAATATCTAAATAATTATAATTCGGAATAAATGATGAATATCCTGTTCC 4500 Query 183169 AATACCTTCAGTTCCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTC 183228 || |||||| ||||| |||| | || |||| | ||| | |||||| | ||||| Sbjct 4501 TATTCCTTCACAACCATTCACCAGTATAGTTGGTATAACAGGTATATAATATTGTGGTTC 4560 Query 183229 GATTTGTTTACCGTCGTCGTCGAGATAGTTTAATACTGGATCATCTTTGGGATCAAAAAG 183288 |||| || ||| || |||| | ||| ||||||| |||||||| | || ||| | Sbjct 4561 TATTTTTTGACCTTCTTCGTTTAAATATTTTAATATAGGATCATCATATTCATTAAATAT 4620 Query 183289 TATTCTCGCGTTTTTAGTCAATTTTGTAAATATATACCTGGTT--TGACTCGCGTCTTTA 183346 |||| | ||| |||||| ||||| |||||||| | | ||| || ||||| Sbjct 4621 ACTTCTTGTCGAACTAGCCAATTTGGTAAAAATATACCTAGCTGCTGAT--GCATCTTTT 4678 Query 183347 CCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGAC 183406 || ||| | |||||||||| ||||||||||| | || ||||||||||| || Sbjct 4679 CCTCCCTCTTTTCTACTACCAAATTGTCCACATGGTTCTAAAAAGTTAATATTATTTGAT 4738 Query 183407 CCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAG-AGACTTCACCGTGGTG 183465 || ||| | ||||| | || | ||| || | | || | |||| || || || || Sbjct 4739 CCTACAAATGTTTGTGCCATGTTAATAATGGTCTGTTGTAATGAAGAC-TCTCCATGATG 4797 Query 183466 ATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGTAAG 183525 ||| | | | || | | ||| | ||||||| || || || |||| | | | Sbjct 4798 ATATGCACTATGCTCTGCTATATATCCAACTAATTGTGCTACTTTACATTCATTTTTTAA 4857 Query 183526 ATTCTTTGTGAAACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATC 183579 ||| || | ||||| | |||| ||||||| ||| ||||| | ||||| Sbjct 4858 ATTTCTTTTAAAACAGCCATATAGTACTTTTCTTTGACCAGGTTTCCATCCATC 4911 >seq1207 Length=28247 Score = 111 bits (122), Expect = 2e-19 Identities = 212/309 (69%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 11438 TACTTCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGG---TTGAT 11494 |||||||||| || | |||||||||||||| || |||| |||||| || || | Sbjct 1335 TACTTCTTTTTGATCCTACTGCATCAATTTCATCAATGAAGACAATACATGGAGCATGTT 1394 Query 11495 TTTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTT 11554 ||| | || ||| ||||| || | | |||| |||| ||||| || || ||||||| Sbjct 1395 TTTTA---GCAGATTGAAATAGTTCTCTTATTCTTCTTGCACCTACACCAACGAACATTT 1451 Query 11555 CAACGAACGATGACCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCAC 11614 | | || ||| ||||| |||| |||||| || || |||||| ||||| || | Sbjct 1452 CTTCAAATTCTGAACCCGATGCTTGAAGAAAAGGCACATTAGCTTCACCTGCTATGGCTC 1511 Query 11615 GTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTT 11674 || | | |||||| ||||| ||||||| |||| ||||| | || | |||| || Sbjct 1512 TAGCAATTAATGTTTTTCCTGTGCCTGGTTCTCCTGATAATAGTATTCCTTTAGGTAATT 1571 Query 11675 TAGCACCGGTACCAAAGT--ACTTTTCTGGCGCCTTGAGAAAATCAACAATTTCTTCGAG 11732 | ||||| || || | || |||| || | | |||||| ||||||||| || Sbjct 1572 TTGCACC--TATTTTTGTAAATTTATCTGAATTTTTTAAATAATCAATAATTTCTTCAAG 1629 Query 11733 CTCATCTTT 11741 ||| | ||| Sbjct 1630 CTCTTGTTT 1638 >seq3920 Length=5462 Score = 100 bits (110), Expect = 4e-16 Identities = 224/331 (68%), Gaps = 14/331 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| |||||||| || || ||| ||||| || || ||||| |||||||| | ||| Sbjct 2813 ATCAAAATCTTCCCCTCCTAAGGATGTATTACCATTTGTTGCTTTTACTTCAAATACACC 2872 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA-TG--AG 7572 |||| ||| | ||| | || | |||||| |||||||| || | |||| | | || | Sbjct 2873 TCCTAAAATTTCTAAAATAGATATATCAAATGTACCACCTCCTAAGTCATATACTGCAAT 2932 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 ||| || ||| |||| |||| ||| | | || | ||| || || ||||| Sbjct 2933 TACCTTTCCATCA----CTTTTTTCTAATCCAAAT-----GCTAAAGCAGCTGCTGTTGG 2983 Query 7633 TTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 ||| |||||||| | || ||| | | || ||||| | | |||||||| || |||| Sbjct 2984 TTCGTTAATAATTCTTAATACATCTAAA-CCTGCAATTTTACCTGCATCTTTTGTTGCTT 3042 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 ||| ||| ||||| ||||| || || || || || | || || | ||||| | | Sbjct 3043 GTCTTTGAGAATCATTAAAATATGCTGGTACTGTAATAACAGCTTGATGCACTTTTCTTC 3102 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTT 7782 | | ||| ||| || | ||||||||||| Sbjct 3103 CTAAATAATTTTCTGCAGTTTCTTTCATTTT 3133 Score = 98.7 bits (108), Expect = 1e-15 Identities = 230/345 (67%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 || ||||| ||| ||| ||| || ||||| |||||||||||||| |||||||| Sbjct 1931 TTGATCTTTTTCTCTATTTAATTCAGCTTCTTGAACCATCTTTTCAATTTCTTCTTTACT 1990 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | || || || | ||| ||||| | || |||| | ||||| Sbjct 1991 CAAACCACCACTAC--TTTG-AATAGTAATTTGTTGTTTTTTATTTGTCATTTTATCAAT 2047 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||| || || | ||| |||| |||||||||||||| | || | ||||||||| Sbjct 2048 AGCGGATATGTTAATAATTGCATTAGCATCAACATCGAATGTAACTTCAATTTGTGGAAC 2107 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| || ||||| | ||||||||| ||||||||| | || | | | ||||| | Sbjct 2108 ACCTCTAGGTGCAGGTGGAATACCAACTAAATCAAAAGAGCCTAACATTTTATTATCACT 2167 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 ||| | | | ||| |||| ||| |||||||| | || | ||| ||||| || Sbjct 2168 AGCCATTTCTCTTTCTCCTTGATAAACTTTAATACTAACTTGTGTTTGGTTATCGGCAGC 2227 Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCT 6912 || || || ||||| |||||| | ||| || || |||||||| Sbjct 2228 TGTGGAAAATATTTGCGATTTCTTTGTTGGGATTGTTGTATTTCT 2272 >seq694 Length=12044 Score = 93.3 bits (102), Expect = 5e-14 Identities = 279/422 (66%), Gaps = 23/422 (5%) Strand=Plus/Minus Query 11276 TACGATCAAATCTACCGGGGC--GTAATAACGCATCGTCGAGTATATCGATACGGTTTGT 11333 |||||||||||||||| || | || ||| || || | |||||| | | || || Sbjct 5376 TACGATCAAATCTACCTGGTCTAGTTATA--GCTGGATCTAATATATCTACTCTATTAGT 5319 Query 11334 TGCACCTATAACAACAATTTCAG--TTTCAT-TCTCGAAACCATCCATTTCTGTTAATAA 11390 || ||| || |||| || | || || | | |||||||||||||| ||| | Sbjct 5318 ACCAGCTAAAATGACAACTTTATCATTAGATGTATGAAAACCATCCATTTCGACTAACAT 5259 Query 11391 TTGGTTAATTGTTTGTTCACGCTCATCGTT------TGCCGCAAACCCATTCATACT--T 11442 |||||| | ||| | ||| | |||||| || | ||||||| || || | | | Sbjct 5258 TTGGTTTAATGTATTTTCTCTCTCATCATTTCCACCTCCCGCAAATCC--TCCTTTTGAT 5201 Query 11443 CTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGT 11502 ||||| | || | ||||| |||||||| ||||| || ||| | || || || | | Sbjct 5200 CTTTTTCTTCCTACTGCATCTATTTCATCAATAAAAATTATAGATGGAGCATGTTTTCTT 5141 Query 11503 GCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAAC 11562 || |||||| || | |||||| || || | |||||||||| ||| | || Sbjct 5140 GCTTGAGCAAATAATTCTCTTACTCTTGATGGTCCAATACCTACAAACACTTCGATAAA- 5082 Query 11563 GATGA---CCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCT 11619 || | || | || | | || |||||||| || ||| || || | || ||| Sbjct 5081 -ATCACTTCCACTAATA-TTAAAGAAAGGAACATTAGCTTCTCCTGCAACTGCTTTAGCT 5024 Query 11620 AAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCA 11679 | | |||||| ||||| |||||| ||| ||||| ||||||| |||||||||| || Sbjct 5023 AGTAATGTTTTCCCTGTTCCTGGTGCACCACATAATAGTGCACCCTTTGGTATTTTTGCT 4964 Query 11680 CC 11681 || Sbjct 4963 CC 4962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635075082306800