Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1378 127 3e-24 >seq1378 Length=4202 Score = 127 bits (140), Expect = 3e-24 Identities = 827/1312 (63%), Gaps = 32/1312 (2%) Strand=Plus/Plus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| || || |||||||| | || || ||||||| || |||||||||||||| | Sbjct 796 TTCACTCATGCTACACCAACATTATTTAATTCTGGTACTCCTAGACCCCAAATGTCGTCT 855 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 ||||| ||| | | | || |||||||| | || || | || || || | | Sbjct 856 TGTTTTCTTTTATCTATGAAATCAGATTCAATAGAAGGTATATTCGAAACACTAAAACAG 915 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGAT-GCACATCCATGATGTCAGAGC 111883 ||||| | || || ||||||||||| || | ||| | || ||| | |||| Sbjct 916 TGTGCTCTTATTAGTAAAACAGCTGGTGGTATAGGTGTAGCAG-TACAAGATATAAGAGG 974 Query 111884 CAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 111943 | || || |||||||||||| ||||| ||| |||| | | || ||| | | Sbjct 975 ACAAAATTCGTATATTAGAGGTACGAATGGAATTTCAAATGGACTCGTACCTATGTTAAG 1034 Query 111944 CGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTAT 112000 || ||||| | ||||| | |||||| | |||| || | | || || ||| | Sbjct 1035 AGTTTTTAATGATACAGCTAGATATGTAGATCAAGGAGGAGGAAAAAGAAAAGGTTCTTT 1094 Query 112001 CGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAA 112060 || || ||| |||| |||||||| | ||||| | || || | || || | || Sbjct 1095 TGCTGTTTATATTGAACCATGGCATTCAGATATATTCGAATTTTTAGATTTAAGAAAAAA 1154 Query 112061 CCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCT 112120 || || | || || | | ||| | || | ||| | ||| |||| || | Sbjct 1155 TCATGGCAAAGAAGAATTAAGAGCAAGAGATTTGTTTTATGCTGTTTGGGTTCCTGACTT 1214 Query 112121 CTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCAC 112179 |||||||| ||||| | || | | |||||| || | | |||||| | || || | Sbjct 1215 GTTCATGAAAAGAGTAAAAGAAAATCAAAATTGGACTTTAATGTGTCCAAATGAATGC-C 1273 Query 112180 CCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG 112239 | || || || | |||||| || |||||| | || ||||| || |||| Sbjct 1274 CAGGACTAAGTGAAACATGGGGTGAAGAATTTGAAAAATTATATGTTAAGTATGAAGAAG 1333 Query 112240 AAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTC 112299 ||| | || | || || ||| ||| | ||| ||||| | | || Sbjct 1334 AAAATATGGGCAAAAAAACTGTATTAGCACAAGATTTATGGTTTGCTATATTACAAAGTC 1393 Query 112300 AAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAAC-CAAAAGAGTAAT 112358 ||| || || ||| ||||||||| | || |||||| | ||||| | ||| | ||| Sbjct 1394 AAATTGAAACAGGTGTTCCATATATGTTATATAAAGACTCATGTAATGCTAAATCG-AAT 1452 Query 112359 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACA 112418 ||||| ||| | ||| ||||| || || | ||| ||||| | || | ||| Sbjct 1453 CAAAAAAATCTAGGTACTATCAAATGTAGTAATTTGTGTTGTGAAATTATTGAGTATACT 1512 Query 112419 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 112478 ||||| ||||| ||||| || || || || ||| | ||| | |||||| Sbjct 1513 TCACCTGATGAAGTTGCTGTATGTAATCTTGCTTCTATTGCTTTATGCAAATTTGTGGAC 1572 Query 112479 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAA 112538 || | ||| |||| ||| | ||||| | | ||| |||| |||| | | || | | Sbjct 1573 TTGGAAAAAAAAGAATTTAATTTTAAAAAATTATATGAAATTACAAAAATTATTACTAGA 1632 Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAA---TCT 112595 || ||| | | | | ||||| ||||||| |||||| || | || ||| ||| Sbjct 1633 AATCTAGATAAAATAATTGAAAGAAATTATTACCCTATTAAAGAAGCC---AAAGTGTCT 1689 Query 112596 AATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTT 112655 || | ||| || | || || ||| | ||||| || || | || ||| || || ||| Sbjct 1690 AACAAGAGGCATAGACCTATAGGTATAGGTGTTCAGGGGTTAGCAGATACTTTTATGCTT 1749 Query 112656 TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACA 112715 | | | | | ||| || || ||||| || || | ||| | ||||| || || Sbjct 1750 TTGAGATATCCCTATGAGTCGGATGAAGCTAAAGAGTTGAATAGAAGAATATTCGAAACC 1809 Query 112716 ATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAA 112775 ||||| | || ||| | || | | ||| || ||| | || |||| || |||||| Sbjct 1810 ATGTACTATGCTGCTTTAGAAATGTCTATGGAATTAGCAATGATTCATGGACCTTATGAA 1869 Query 112776 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG-----GAAG 112830 | | | ||||| ||||||| ||||| | || ||||||||||||||| ||| Sbjct 1870 TCTTATCAGGGTAGTCCAGCTAGTCAAGGTATTCTACAATTTGATATGTGGAATAAAAAG 1929 Query 112831 GT-GAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGA-AGGG 112888 || || | ||| ||| | ||||| | || || | | | | | | | | || Sbjct 1930 GTAGATAGTAAG---TACTGGAATTGGGATGAACT-AAAGCTCAAAATACGTAAACATGG 1985 Query 112889 TCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTT 112945 | | | | | ||||| | | ||||| |||||||| || || || | ||||| ||| Sbjct 1986 TTTAAGGA--ATTCTTTACTACTTGCACCTATGCCAACTGCTTCTACATCTCAAATACTT 2043 Query 112946 GGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA 112997 ||| ||||| |||| ||||||||| || || | ||||| ||| |||||| Sbjct 2044 GGG-AATAACGAATCCTTTGAACCTTATACTAGTAACATTTATTATAGAAGA 2094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620685990034400