Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1378 107 2e-18 >seq1378 Length=4202 Score = 107 bits (118), Expect = 2e-18 Identities = 604/959 (63%), Gaps = 11/959 (1%) Strand=Plus/Minus Query 110090 AAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGT 110149 |||| ||||| ||| |||| ||||||||||| | ||| || || | |||| || ||| Sbjct 1750 AAAGCATAAAAGTATCTGCTAACCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGT 1691 Query 110150 TAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCT 110209 |||| | || || | |||||| | || | || || | || ||||| Sbjct 1690 TAGACACTTTGGCTTCTTTAATAGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTC 1631 Query 110210 TCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTAT 110269 | || | | | || || ||||||| | ||| | ||| || ||| | ||| | Sbjct 1630 TAGTAATAATTTTTGTAATTTCATATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGT 1571 Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 ||| ||||| | ||||||||| |||||||| || |||| | || || | Sbjct 1570 CCACAAATTTGCATAAAGCAATAGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAG 1511 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 | || || | |||||| |||||| || || || || ||| | || || |||| Sbjct 1510 TATACTCAATAATTTCACAACACAAATTACTACATTTGATAGTACCTAGATTTTTTTGAT 1451 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 ||||||| | || |||| || ||||| | ||| ||||| ||| ||||| | || Sbjct 1450 TCGATTTAGCATTACATGAGTCTTTATATAACATATATGGAACACCTGTTTCAATTTG-- 1393 Query 110450 ACTTGAGAATG--GCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTC 110507 |||| ||| || ||||| ||| || |||||| || | | | ||| Sbjct 1392 ACTTTGTAATATAGCAAACCATAAATCTTGTGCTAATACAGTTTTTTTGCCCATATTTTC 1333 Query 110508 CTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTT 110567 || || ||||| || || | |||||||| | || | ||| || || | Sbjct 1332 TTCTTCATACTTAACATATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCC-TG 1274 Query 110568 CGCCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACA 110626 || || | ||||| | | | ||||||| | || | || || |||||||||| Sbjct 1273 GGCATTCATTTGGACACATTAAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACA 1214 Query 110627 GGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGT 110686 |||||||| ||| | || | || | || | | ||||| | || || | Sbjct 1213 AGTCAGGAACCCAAACAGCATAAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGAT 1154 Query 110687 TGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746 | | || || ||||| || | ||||| || ||||||||||| | ||| ||||| | Sbjct 1153 TTTTTCTTAAATCTAAAAATTCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAA 1094 Query 110747 TGGATCCCTTAC---GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCC 110803 || || || | | || | || | ||||| | ||||| |||| || || | Sbjct 1093 AAGAACCTTTTCTTTTTCCTCCTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTC 1034 Query 110804 TGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGG 110863 | | |||||| | | ||||| || ||||| ||||| ||||| || || | Sbjct 1033 TTAACATAGGTACGAGTCCATTTGAAATTCCATTCGTACCTCTAATATACGAATTTTGTC 974 Query 110864 CACGAATGTCGTGGATATGC-ATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC 110922 | | || || || | ||| | ||| |||||||| || |||||||| | |||||| Sbjct 973 CTCTTATATCTTGTA-CTGCTACACCTATACCACCAGCTGTTTTACTAATAAGAGCACAC 915 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAA 110982 | | | ||||| | | ||||| || || ||||||| || | | | ||||| ||| Sbjct 914 TGTTTTAGTGTTTCGAATATACCTTCTATTGAATCTGATTTCATAGATAAAAGAAAACAA 855 Query 110983 GAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || ||||| || || | ||| || || | ||| || | ||| ||||| |||||| |||| Sbjct 854 GACGACATTTGGGGTCTAGGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAA 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588922476806000