Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1378 95.1 1e-14 >seq1378 Length=4202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 343/520 (66%), Gaps = 29/520 (6%) Strand=Plus/Minus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAG-ATTT 105983 |||||| ||| ||||| | || || ||||||||| |||| ||||| |||||| |||| Sbjct 2094 TCTTCTATAATAAATGTTACTAGTATAAGGTTCAAAGGATTCGTTATT-CCCAAGTATTT 2036 Query 105984 GTGCGGTGGAGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCT-TTT 106040 | | || || || |||||||| ||||| | | ||||| | | | | ||| | ||| Sbjct 2035 GAGATGTAGAAGCAGTTGGCATAGGTGCAAGTAGTAAAGAAT--TCCTTAAACCATGTTT 1978 Query 106041 CCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTC-ACCTTC---- 106095 | | | | | || || ||||||| | ||| ||| | || ||||| Sbjct 1977 ACGTATTTTGAGCTTT-AGTTCATCCCAATTCCAGTA---CTTACTATCTACCTTTTTAT 1922 Query 106096 -CCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154 ||||||||||||||| || | ||||| | ||| ||||| | | | ||||| | Sbjct 1921 TCCACATATCAAATTGTAGAATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAG 1862 Query 106155 AACCTTGGGCTTCA--GCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTT 106211 || || ||| || ||||| | || | || | | || | |||||||||| Sbjct 1861 GTCCATGAA--TCATTGCTAATTCCATAGA-CATTTCTAAAGCAGCATAGTACATGGTTT 1805 Query 106212 CAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAA 106271 | || || | ||||| ||| || |||||||| || ||| | | || | | | | Sbjct 1804 CGAATATTCTTCTATTCAACTCTTTAGCTTCATCCGACTCATAGGGATATCTCAAAAGCA 1745 Query 106272 TAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAG--A 106329 |||| ||| || | || |||||||| | ||| |||||||| || | | | |||| | Sbjct 1744 TAAAAGTATCTGCTAACCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACA 1685 Query 106330 CTTTCGCGCAGTC-TCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGG 106388 |||| || || | || || ||| ||||||| ||||| | | | ||||||| | | Sbjct 1684 CTTTGGC---TTCTTTAATAGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAG 1628 Query 106389 TAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 106428 ||| ||| ||||| ||||||| | ||||| | ||| ||| Sbjct 1627 TAATAATTTTTGTAATTTCATATAATTTTTTAAAATTAAA 1588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589927185494800