Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq170 111 2e-19 seq291 109 7e-19 >seq170 Length=9591 Score = 111 bits (122), Expect = 2e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 126942 AAAATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATG 127001 ||||||||||| ||||| || || ||||| | | |||||||||||| |||||||||| Sbjct 5355 AAAATTTTTATTGGTCCGACTTATTATCAAAGGTTAAAACATATGGTTGAAGATAAAATA 5296 Query 127002 CATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGTTC 127060 |||||||||||| || | |||| | |||||| |||||||||| || | || Sbjct 5295 CATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-CGTCAACCAACAGAAGGAAGATC 5237 Query 127061 CCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 127105 || |||||| || | ||||| |||||||||| ||||||||| Sbjct 5236 AAGAGATGGTGGTCTACGTTTTGGTGAAATGGAAAGAGATTGTAT 5192 >seq291 Length=4955 Score = 109 bits (120), Expect = 7e-19 Identities = 424/655 (65%), Gaps = 20/655 (3%) Strand=Plus/Plus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGT--TTACGC 104853 ||||| |||||| | || ||| | ||||| | |||||||| ||| || | ||| Sbjct 3742 AATTTAATTTAAATCAAT--ATTTT-CCATTATTAACAACAAAGAAATTATTCCTTAGAG 3798 Query 104854 CAATATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAAC---TTGTT 104910 |||| | | |||| ||| | ||| | || | ||| ||||||| || ||||| Sbjct 3799 GAATAAT--TGAAGAGTTACTTTGGTTTATAAGAGGAGAAACAAATGGAAATACTTTGTT 3856 Query 104911 AAATGAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTG 104970 |||| ||| || | | | ||||| | | ||||| || | | ||||| ||| | Sbjct 3857 AAATAAAAATG---TAAGAATATGGGAAGCAAATGGAACAAGAGAATTTTTGGATAACAG 3913 Query 104971 TGGATTTCACTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACA 105030 ||| | | || ||| ||| |||||||| || ||||| ||||||||||| || Sbjct 3914 AAAATTATTCCATAGAGAAGTTAATGACTTAGGACCTATATATGGTTTTCAATGGAGGCA 3973 Query 105031 TGCTGGAGCTCAATATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGACCAAT 105089 | || ||| |||||| | | | || || || ||||| | |||| | || |||| Sbjct 3974 TTTCGGTGCTGAATATA-CAAATATGCATGCCAACTATGAAGATAAAGGAGTTGATCAAT 4032 Query 105090 TAAGTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATA 105149 ||| | |||| | ||||||||| | || || ||||||| ||| | | Sbjct 4033 TAAAAAATATTATCCATTTAATAAAAAATGATCCAACTAGTAGAAGAATTATTTTGTGTG 4092 Query 105150 GTTGGAATGTGTCACAATTATCA-GATATGGCTCTTCCACCGTGTCATTGTTTGGTACAA 105208 |||||||| | | || | | | ||||| || || || |||||| ||| ||| Sbjct 4093 CATGGAATGT-TAAAGATCTTGATCAAATGGCACTACCTCCTTGTCATATTTTATGCCAA 4151 Query 105209 TTTTACATTAGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTA 105268 ||||| || || || | ||| ||| |||||||||| || |||||| Sbjct 4152 TTTTATGTTTTTGATGGAA---AATTATCATGTATTATGTATCAAAGGTCATGTGATTTA 4208 Query 105269 GGATTAGGTGTACCATATAATATTGGTTTCTATTCATTTTTGGTGTGTGTTCTCTCAAAA 105328 || ||||| || || | |||||||| | ||||||| | || | | | || || Sbjct 4209 GGTTTAGGAGTCCCTTTTAATATTGCCTCCTATTCAATATTCACTCATATGATTGCACAA 4268 Query 105329 TGGTGTAATCTAACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCT 105388 ||||||| || || | | | || || |||| ||| ||| ||| ||||| ||| | Sbjct 4269 GTGTGTAATTTACAGCCTGCACAGTTCATACATATTTTAGGAAATGCACATGTTTATAAT 4328 Query 105389 AACCATGTTGACCAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCCAA 105443 || ||| ||||| |||||| | || ||||| || | ||| ||| ||||||||| Sbjct 4329 AATCATATTGACAGCTTAAAAGTACAGTTAAATAGGATACCCTACCCCTTCCCAA 4383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658343367609200