Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1378 461 9e-125 seq1502 381 7e-101 >seq1378 Length=4202 Score = 461 bits (510), Expect = 9e-125 Identities = 1272/1929 (66%), Gaps = 86/1929 (4%) Strand=Plus/Minus Query 47303 TTTTAAAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATAT 47362 |||||| | |||||| ||||| | |||||||||| | ||||| | ||| || Sbjct 2139 TTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAAAT 2080 Query 47363 ATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGT 47422 ||||| ||||| ||||| | ||||| ||||| |||| ||||||| || || || || Sbjct 2079 GTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCAGT 2020 Query 47423 AGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNN 47482 ||||| | ||||| || ||| ||| |||| |||| ||| |||| | Sbjct 2019 TGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTTAG 1960 Query 47483 NNGTTTCCAATCCCAAAGATCTGATGGAACAAC------ATTCCAAAAATCATATTGAAG 47536 | ||||| ||| | || | | | || |||||| | |||| |||| || Sbjct 1959 TTCATCCCAATTCCA--GTACTTACT-ATCTACCTTTTTATTCCACATATCAAATTGTAG 1903 Query 47537 AATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAG 47596 ||| |||| ||| ||| ||| | ||| | || |||||| || | | | || | Sbjct 1902 AATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAATCATTGCTAA 1843 Query 47597 TTC-ACA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGA 47654 ||| | | || | ||| || ||| ||| || || ||||| |||||| || | || | | Sbjct 1842 TTCCATAGACAT--TTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCTATTCA-A 1786 Query 47655 TTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCC 47713 || || ||||| || ||| | ||||| || |||||||| || || Sbjct 1785 CTCTTTAGCTTCATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACCC 1726 Query 47714 TTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAAT-G 47772 |||||||| ||||| || |||||||| | || ||||| | | |||||| |||| | Sbjct 1725 CTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTT-TAATAG 1667 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 | || | ||| | || || ||||||| |||| |||||| Sbjct 1666 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1607 Query 47833 TTAATTTATTAAAATCAAACT-TGTTATTTATAA-----CAAACCT--ATTAAGTGCTAT 47884 |||||| ||||||| ||| | | || ||| || |||| | || ||| | || Sbjct 1606 ATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGTCCACAAATTTGCATAAAG--CAAT 1549 Query 47885 AGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACA 47944 ||| || |||||||||||||| || |||| || |||||| | || |||||| ||| Sbjct 1548 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1489 Query 47945 TAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCG 48002 | ||||| ||||||||||||||| | ||||| ||||| ||| | |||||| | Sbjct 1488 CAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCAT--TACATGAG 1431 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 || || || | |||| | || || ||||| || ||| || | |||| ||| Sbjct 1430 TCTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCAT 1371 Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTATAT 48119 | | || | | ||| ||| | | | |||| || | ||| || ||| |||| Sbjct 1370 AAAT--CTTGTGCTAATA-CAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATAT 1314 Query 48120 AACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATC 48179 || || |||||||| || || | | | || || || |||||||| |||||||| Sbjct 1313 AATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATT 1254 Query 48180 AATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCT 48239 || | ||||| | || | ||||||||| |||| || | || || | ||||| ||| Sbjct 1253 AAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCA 1194 Query 48240 ATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAG 48299 ||| ||||| || | ||||| |||||| |||||| ||| || | | || | ||| Sbjct 1193 TAAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAAT 1134 Query 48300 TCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTA 48359 || | |||||| | |||||||||||| | ||| | || | |||| || ||| Sbjct 1133 TCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCT 1074 Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||||| |||||| || |||| ||| ||||||||||||| || || | ||| Sbjct 1073 CCTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCA 1014 Query 48420 TTTGATATACCATTGGTTCCCGAAATATA---ACTTCCACTAGCTCTTATATTACTAATT 48476 ||||| || ||||| || || |||||| | || | ||||||||| | | Sbjct 1013 TTTGAAATTCCATTCGTACCTCTAATATACGAATTTTGTC---CTCTTATATCTTGTACT 957 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | | |||||||||||| || ||||| || ||||||||| |||| || || || | Sbjct 956 GCTACACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAAT 897 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || |||||||| ||| | ||||| ||| ||||||||| |||||||| || | Sbjct 896 ATACCTTCTATTGAATCTGATTTCATAGATAAAAGAAAACAAGACGACATTTGGGGTCTA 837 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 ||| || ||||||||||||||||| | |||||| | || |||| | || | ||| Sbjct 836 GGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAA 777 Query 48657 TTATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCAT 48715 | ||| ||||| | | ||||||||| || | |||||||||||| ||||| | ||| Sbjct 776 TGATAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCAT 718 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 ||| | || ||| |||||||||| ||||||||| || || || | ||| ||| |||| Sbjct 717 TAATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTC 658 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCGT-TATCATTAATAATTGATGA 48832 ||||| ||||| |||||||| | || | ||| ||| ||| || |||| | Sbjct 657 TAATGTCTTAAATCCAAAATAATCATAATTAAAATCACGTGTATAAT---CAATTTCTTT 601 Query 48833 ATTTATTCTTTCCTTATGTTTATATACTACATCCAT-TACATTTT---TTGATATAATTG 48888 ||| | || ||| |||| ||| || | || || ||| ||| | || || || | ||| Sbjct 600 ATTCAATCGTTCTTTAT-TTTGTAAAATAAATTCATATACTTCTTTACTTATTAAACTTG 542 Query 48889 -----ATTCCT--------------TGTAAAGA--TCTTCTACAACAT-CACTAAATAtt 48926 ||||| |||| | | ||||| | || | | ||| || Sbjct 541 CTGGTCTTCCTCTTACATCTTTATATGTATATAATGCTTCTGCTACTTCCCCTATAT-CA 483 Query 48927 ttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCT 48986 | | || | |||||| | |||| | | | ||||| |||||||| || | | ||||| Sbjct 482 TCACTAGTATTTTTATGTAAATTATCTGTTGTAATTCTTGCAGCTAAAATTGAAAAATCT 423 Query 48987 GGATGAATTGTTGTACATGTACTAGATATTTCT--GCTGCTAATATATCTAATTCTTTAG 49044 |||||| |||| | ||| || | | || ||| ||||||||| ||||||||| | Sbjct 422 GGATGAGTTGTAG-CCATATA-TGCACATGTCTGAGCTGCTAATTCATCTAATTCACATG 365 Query 49045 TAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTTACTGGATCTATAT 49104 | ||| || |||| || || | ||| ||| || || || ||||||||| | Sbjct 364 TTTTTATTCCACTATACATACCATTAATTACTCCTTGTGTTACTCTTGCTGGATCTA-CT 306 Query 49105 GATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTATCAAACATTA 49164 || | || || ||||| ||||| ||| |||||| ||||| ||||||| || Sbjct 305 AATTC--ATGAAGACCATATGATAATCTTTGTATTCTTTTCAAAATTTGATCAAACGATA 248 Query 49165 TATTCTCTT 49173 ||| |||| Sbjct 247 TATCTTCTT 239 >seq1502 Length=19671 Score = 381 bits (422), Expect = 7e-101 Identities = 617/871 (71%), Gaps = 31/871 (4%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||| ||| ||| ||||| ||||||||||||||||| || ||||| |||||||| | Sbjct 5909 CATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTG 5850 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||||| | ||||| ||| ||| ||||||||| || | | | |||| | |||| Sbjct 5849 AAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCC 5790 Query 18777 TAA---TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTT-CATCATATCAC 18832 ||| |||||| | | ||||| || ||||||| ||| ||| ||| ||| | ||| Sbjct 5789 TAAACATTCTAACAAT---CTATCAGCCACAAATTCAATGTAT-TGTGACATTA-ATCTT 5735 Query 18833 -AATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTT 18891 ||||||||||||| || | | ||||| | || | |||| | |||||| | | Sbjct 5734 GAATTCATTCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCT 5675 Query 18892 ACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTAT-----AGAAGAT 18946 ||||| ||| || |||| ||| | ||||| | | | ||| || ||| Sbjct 5674 ACTGCTTCTTTTACAATATTCTGAACAATTTCTTC--TGGTAATTTATTTTCCAGCAGAC 5617 Query 18947 GTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCAT 19006 || | || ||||| ||| || ||||| ||| || |||||||| || ||||||| Sbjct 5616 ---TATATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCAT 5560 Query 19007 TAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCAAA 19064 || ||| |||| ||| | | | | | || ||||| |||||||| |||| | ||| Sbjct 5559 TACTAAAAGTTAGCCCATGTA--ATTTATTTTGTTTTTTAAACCAGAAAATAGCACAAAA 5502 Query 19065 TGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT 19124 ||| ||| |||||||||||||| |||| || |||| | |||| || || Sbjct 5501 ACTACCACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAA-- 5444 Query 19125 AGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCAT 19184 | || |||||| ||||||||| ||||| ||| || ||||| ||| ||| || Sbjct 5443 -GAATTGGTATTATTAATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTAT 5385 Query 19185 TGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTAT 19244 | ||||| | | ||||| || | ||||| | | ||| || | ||| ||| || Sbjct 5384 ATTTTCTATTGCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAAT 5325 Query 19245 CAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACA 19304 ||| |||||||| |||||||||||||||| || | || || ||||| ||||| Sbjct 5324 CAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATT- 5266 Query 19305 TCTT-GCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAACT 19362 |||| ||||| ||||| || ||||| || ||||| || | | |||||||||| |||| Sbjct 5265 TCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAAAACT 5207 Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAG 19422 ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| | Sbjct 5206 ATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCA 5147 Query 19423 GTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAA 19482 ||||| | | |||| || | ||| | |||||||||| ||||| |||||||||| Sbjct 5146 TTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAAT 5087 Query 19483 GAAGCCTCTGCTTTTTTATACATGTTCCATA 19513 ||||| |||||||||||||| | || ||||| Sbjct 5086 GAAGCTTCTGCTTTTTTATAAAAGTCCCATA 5056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562057718362800