Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1502 210 3e-49 >seq1502 Length=19671 Score = 210 bits (232), Expect = 3e-49 Identities = 549/830 (66%), Gaps = 13/830 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||| ||| ||||| || |||||| | |||||||||||||||| ||||||| Sbjct 5909 CATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTG 5850 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 || ||||| ||||| ||| ||| ||||| || || | | | | ||| Sbjct 5849 AAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCC 5790 Query 36992 TAATTCCTTCAGA-AGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 ||| | ||| | | ||||| || |||||||| ||||||| |||||| | | | Sbjct 5789 TAAA-CATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAAT 5731 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || || || | | || | | || | |||| | ||||| | ||| | Sbjct 5730 TCATTCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTG 5671 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 | ||||| || ||||| || || |||||| | | || || | || | | Sbjct 5670 CTTCTTTTACAATATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACTATATA 5611 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 |||||| ||| || |||||| |||||||||||||| || ||||||||| ||| | Sbjct 5610 TTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAG 5551 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 ||| || | | | | | |||||||| ||| || || || |||| ||| || Sbjct 5550 TTAGCCCATGTAATTTATTTTGTTTTTTAAACCAGAAAATAGCACAAAAACTACCACTAA 5491 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 | || |||||||| || |||| |||||| | ||| | |||| || | || Sbjct 5490 ACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAG---AATTGGTAT 5434 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | ||||||||| | ||| || || ||||||| | || |||| |||| Sbjct 5433 TATTAATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTG 5374 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACT--ATCTGTTATATAAGTATCAATTAGTAAACT 37468 | | || | || || | || | | ||| |||||||| ||||||| | ||||| Sbjct 5373 CGTGAAATA--AATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACT 5316 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || |||| || |||||||| || | ||||| |||||| |||||| | ||||||| Sbjct 5315 GTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTC 5256 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | || |||||| || | ||||| | |||| || ||||| |||||| |||||||| Sbjct 5255 CGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCATCACT 5196 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGA--TAATTTT 37646 |||||||| || || | |||| ||||||||||||| |||||| ||| | ||||||| Sbjct 5195 TGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCAT--TTTCATTTAATTTT 5138 Query 37647 TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | |||| || | ||| |||||||||| | || || | |||||||| Sbjct 5137 TCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAA 5088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592262973210800