Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq260 361 4e-94 seq428 244 7e-59 seq1378 194 1e-43 seq3920 174 1e-37 seq3356 158 8e-33 seq1654 143 2e-28 seq574 107 1e-17 seq291 93.3 3e-13 seq1821 86.0 4e-11 >seq260 Length=2304 Score = 361 bits (400), Expect = 4e-94 Identities = 695/1002 (69%), Gaps = 37/1002 (4%) Strand=Plus/Plus Query 475318 TGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGA 475377 ||| ||| |||| || || | ||||||||| | ||| || | ||||||||| ||||| Sbjct 758 TGATGTATCTTTGTTAACAATTGAAGATGGTATATTCGAAGTGAAAGCAACAGCAGGAGA 817 Query 475378 TTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTATCATGGTGTGTTGAAGATTT 475437 | |||| | |||||||||||||||||||| ||||| || | ||||| |||||||| Sbjct 818 TACACACTTAGGTGGTGAAGATTTTGATAACAGACTAGTTAATTTCTGTGTAGAAGATTT 877 Query 475438 CAAGAGGAAAAATAAAGTT---GATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAG 475494 ||||| ||||||| | | ||| | |||| | | || |||||||||| | | || Sbjct 878 TAAGAGAAAAAATAGGGGTAAAGATTTATCAAAAAATAGTAGAGCATTAAGAAGGTTAAG 937 Query 475495 AACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGT 475554 ||| |||||| | || || || | | || || |||| ||| |||| | ||| | Sbjct 938 AACACAATGTGAAAGGGCCAAACGTACGTTGTCATCCTCTACACAAGCTACCATCGAAAT 997 Query 475555 TGATTCTCTTTTTGAAGGAATTGATTATAAT---ACTCTTATTACAAGGGCTAAATTTGA 475611 |||||| ||||||||||| || ||||||| | || | | || | || | |||||| Sbjct 998 TGATTCCCTTTTTGAAGGTATAGATTATAGTGTAACAGTAAGTAGA---GCAAGATTTGA 1054 Query 475612 AGATATTTGTTCTGATCTCTTT-AGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAG 475670 ||| | ||| ||| || ||| || | || | | ||| || || |||| | | || Sbjct 1055 AGAGTTATGTATTGA-CTATTTCAGGGATACGTTAGTACCAGTAGAGAAAGTCTTAAAAG 1113 Query 475671 ATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAA 475730 || ||| | || ||| | || |||||| ||||| | || || ||||||||| ||| Sbjct 1114 ATGCTATGATGGATAAAAAAAGTGTACATGAAGTTGTTTTAGTTGGTGGTTCAACACGAA 1173 Query 475731 TTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAA-AAGTTAAATGAAAGT 475789 |||| || ||| | | | | | || |||||| || ||| ||| ||| | | Sbjct 1174 TTCCTAAGATACAAACATTAATCAAAGAATTTTTTAACGGCAAAGAAGC---ATGTAGAT 1230 Query 475790 GTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAG 475847 || || || ||||||||||| |||||||| || || || |||||||| || ||||| | Sbjct 1231 CTATTAACCCAGATGAAGCTGTAGCATATGGTGCAGCAGTACAAGCAGCAATATTATCGG 1290 Query 475848 GTCAATCAGACGAGAAACTAAATAATATTGTACTTGTT----GACGTAA-CTCCACTTTC 475902 || | |||| | | | || || ||| || ||||| || ||| |||| | || Sbjct 1291 GTGA-TCAGTCCA-ATGCTGTTCAAGATT-TA-TTGTTATTAGATGTATGCTCCT-TATC 1345 Query 475903 ATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTAT 475962 |||||| | ||||| | ||| || ||||||| || | ||||| |||||||| |||| Sbjct 1346 CTTAGGTTTAGAAACTGCTGGTGGTGTTATGACAAAATTGATTGAAAGAAATACAACTAT 1405 Query 475963 CCCATGCAAAAAA---TCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 ||| |||||||| ||||| | ||| | || ||| ||||||| ||| || ||| Sbjct 1406 TCCA-GCAAAAAAAAGTCAAA--TCTTTACGACGTATGCTGATAACCAACCAGGTGTGTT 1462 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 |||||| | | |||||| |||||| ||| || ||||||||||| | || | || Sbjct 1463 AATCCAAGTATATGAAGGAGAAAGAGCATTAACAAAAGATAATAATTTGTTAGGTAAATT 1522 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | || | || ||||| || ||||| || || ||| || |||||||||||||| ||||| Sbjct 1523 TCATTTAGATGGTATACCACCTGCCCCTAGGAAAGTACCACAAATTGAAGTTACGTTTGA 1582 Query 476140 TATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA-ATCTAGTAACAAGAGTA 476198 ||| ||||||||||| ||| | |||||||| ||| ||| || | | | | || | | Sbjct 1583 TATAGATGCAAATGGAATTTTAAATGTTACAGCTGTTGAGAAGAGCACGGGAAAACA-AA 1641 Query 476199 AAAATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGG 476258 | |||| |||||||| || || ||||| || | ||| ||||| | ||||||| Sbjct 1642 ATCATATTACTATTACCAATGATAAGGGTAGGTTATCCCCTGAAGAAATTGATCGTATGG 1701 Query 476259 TTGATGAAGCCAAAGAGTTTGAAGAAGCTGATAACAAGAGAA 476300 || |||| || || | | | ||| || ||| ||||||| Sbjct 1702 TTAATGATGCAGAAAAATATAAAGCAGAGGAT--GAAGAGAA 1741 Score = 280 bits (310), Expect = 1e-69 Identities = 420/596 (70%), Gaps = 3/596 (1%) Strand=Plus/Plus Query 474326 ATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGT 474385 ||||| |||||||| || || ||||| || ||| ||||| | ||| ||| ||||| Sbjct 153 ATTGCCATTGGTATCGACTTGGGAACAACGTACTCATGTGTTGGTGTATGGAGAAATGAA 212 Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || || || || || || || || || || ||||||||||| ||||| |||||| | ||| Sbjct 213 AACGTGGACATTATAGCAAACGATCAGGGAAATAGAACAACCCCATCGTATGTTGCCTTT 272 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||||| || || || || |||||||| || || | |||| ||| ||||| | Sbjct 273 ACTGATACAGAGAGACTAATAGGAGATGCAGCAAAGAACCAAGTTGCTAGGAATCCGGAA 332 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 |||||| | |||||||| || ||||| ||||| | || ||| || | |||| ||| Sbjct 333 AATACTGTATTTGATGCAAAGAGATTAATTGGAAGGAAATTTACAGAATCATCTGTGCAA 392 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGT---GATAAATGTTGGTGGTAAACCATATATA 474622 ||||||| |||||||| |||| || | | ||| | || |||||| || Sbjct 393 AGTGATATGAAGCATTGGCCATTTACAGTAAAGTCAGGTGTAGATGAGAAACCAATGATT 452 Query 474623 GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 |||| | | || ||| |||| ||| |||| || ||| ||||||| ||||||||| Sbjct 453 GAAGTTACATACCAAGGGGAAAAGAAATTATTTCATCCCGAAGAAATTTCATCAATGGTT 512 Query 474683 TTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 ||| || |||||| ||| || ||| | | || || ||| |||| ||| Sbjct 513 TTACAAAAGATGAAAGAAAATGCAGAAGCATTTTTAGGTAAATCCATAAAGAATGCTGTA 572 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 |||||||| |||||||||||||| ||||||||| | |||||||| |||||||| || | Sbjct 573 ATTACTGTACCAGCATATTTTAACGATTCTCAAAGACAAGCAACAAAAGATGCAGGTACC 632 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| || | ||||| | | ||||||||||||||||| ||||| ||| | || ||| Sbjct 633 ATTGCTGGATTGAATGTAATGAGAATTATTAATGAACCAACTGCAGCAGCAATAGCATAT 692 Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 ||| | |||| || | ||| |||| ||||||| || |||| ||||| Sbjct 693 GGTTTACATAAAAAAGGAAAGGGGGAAAAAAATATTTTAATTTTCGATTTAGGAGG 748 Score = 91.5 bits (100), Expect = 1e-12 Identities = 158/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 290827 ACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGC 290886 |||||||| || || ||||| ||||||||||| |||||||| | ||||| | || || Sbjct 695 ACCATATGCTATTGCTGCTGCAGTTGGTTCATTAATAATTCTCATTACATTCAATCCAGC 636 Query 290887 AATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGT 290946 ||| | | | |||| ||||| || | ||| | ||| |||||||| || || || || Sbjct 635 AATGGTACCTGCATCTTTTGTTGCTTGTCTTTGAGAATCGTTAAAATATGCTGGTACAGT 576 Query 290947 AATAACAGCtttttccactttctttttcaaataat-tttctgccatttgtttta---ttt 291002 ||| ||||| || | | | ||| | || ||| |||||| ||| ||| | ||| Sbjct 575 AATTACAGCATTCTTTA-TGGATTTACCTAAAAATGCTTCTGCATTTTCTTTCATCTTTT 517 Query 291003 cTATAAGTATTTGTGCGCAAATTTCTTCAGGTTTATATAATTTTTT 291048 || || ||| || |||||||||| || | | ||||||| || Sbjct 516 GTAAAACCATTGATG---AAATTTCTTCGGGATGAAATAATTTCTT 474 >seq428 Length=3574 Score = 244 bits (270), Expect = 7e-59 Identities = 515/765 (67%), Gaps = 21/765 (3%) Strand=Plus/Minus Query 475595 ACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTT 475654 ||||| || ||||||||||| | | ||| | |||||| |||| | ||||| ||| Sbjct 1511 ACAAGAGCAAAATTTGAAGAGTTAAATGATGACTTATTTAGAGAAACTTTAGAACCAGTT 1452 Query 475655 GAACAAGTTCTCAGA-GATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGT 475713 || |||| | ||| ||| | ||| ||| ||| || | | ||||| || | || Sbjct 1451 AAAAAAGTATT-AGATGATGCAAAATATGAAAAAAGTAAAATTGACGAAATAGTCTTAGT 1393 Query 475714 AGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAA 475773 ||| ||||||||| | || || ||||| | |||| || | | |||||||||||| Sbjct 1392 AGGTGGTTCAACACGTATACCTAAAATTCAACAAATAATTAAAGATTTTTTTAATGGTAA 1333 Query 475774 AAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGC 475833 | | |||| | | | ||||| ||||||||||| || ||||| |||||| ||||||| Sbjct 1332 AGAACCAAATAGAGGAATTAATCCAGATGAAGCTGTAGCTTATGGTGCTGCTATCCAAGC 1273 Query 475834 AGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAAC 475893 || |||| | | ||| ||| || | || | || | || | | || ||||| Sbjct 1272 AGGTATTATTTTAGG------AGAAGA---ATTACAAGATGTAGTTTTATTAGATGTAAC 1222 Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953 |||| | | |||||| ||||||| ||||| |||||||||||| | |||||| | ||||| Sbjct 1221 TCCATTGACTTTAGGTATTGAAACTGTTGGTGGGATTATGACTCAACTTATTAAAAGAAA 1162 Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013 ||| ||| ||| ||||||||| || |||||| |||||| ||||| ||| || | Sbjct 1161 TACAGTTATACCAACAAAAAAATCACAAACATTTTCTACTTATCAAGATAACCAACCAGC 1102 Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073 ||| || ||| | |||||||| ||| || ||| || ||||||||| | | | || Sbjct 1101 TGTCTTAATTCAAGTTTTTGAAGGAGAACGAGCATTAACAAAAGATAATCATTTATTAGG 1042 Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133 || ||| | | |||||||| ||||| | ||||| || || |||||||||| || Sbjct 1041 AAAATTTGAATTATCTGGTATTCCACCTGCACAAAGAGGTGTACCAAAAATTGAAGTCAC 982 Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAA 476193 ||| | ||||| |||||||| | ||||| || || ||| | | || Sbjct 981 ATTTACTGTTGATAAGAATGGTATATTACATGTTGAAGCAGAAGACAAAGGAACTGGTAA 922 Query 476194 GAGTAAAAATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACG 476253 | |||| || |||||||| || || |||||||| | | ||||| || || Sbjct 921 GTCTAAAGGAATTACTATTACCAATGATAAAGGTAGATTATCAAAGGAACAGATAGAAAA 862 Query 476254 TATGGTTGATGAAGCCAAAGAGTTTGAAGAAGCTGATAA-----CAAGAGAAAAGCTGCT 476308 ||| || | || || || |||||| || | ||||| ||||||||| || Sbjct 861 GATGATTAACGACGCTGAAAAGTTTGCTGACGAGGATAAAAATTTAAGAGAAAAAGTG-- 804 Query 476309 ATTGATGCAAAGAATGAACTTGAAAATTATGTTCATAGTGTAAAA 476353 || |||| ||| | | || |||||| | || ||| | ||| Sbjct 803 ---GAGTCAAAAAATAATTTAGACAATTATCTACAAAGTATGAAA 762 Score = 174 bits (192), Expect = 1e-37 Identities = 375/553 (68%), Gaps = 16/553 (3%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 || || |||||| | ||||| ||||| || ||||| | ||| | ||||||| | ||| Sbjct 2378 ATAGGAATTGATCTGGGAACGACTTATAGCTGTGTTGGTGTGTTCAAAAATGGAAGAGTG 2319 Query 474392 GAAATAATTGCCAATGACCA---AGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||| ||| ||| || | ||||||| | | || ||||| ||||| |||||| | Sbjct 2318 GAAATA-TTG--AATAACGAGTTAGGTAATCGTATTACTCCATCCTATGTATCTTTTGTT 2262 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || ||| |||| || || || || | ||||| | | | || | Sbjct 2261 GATGGGGAAAGAAAAGTTGGTGAAGCAGCCAAGTTAGAAGCTACTTTACACCCAACACAG 2202 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 ||| | ||||||| || ||||| || ||| | || ||||||||| || | Sbjct 2201 ACTGTGTTTGATGTAAAGAGATTAATAGGTAGGAAATTTGATGATCAAGAAGTAGTAAAG 2142 Query 474569 GATATG-CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT---AGA 474624 |||| | | ||| |||| | | | | || || || |||||| |||| || Sbjct 2141 GATAGAACATTATTA-CCTTATGACATAGTGAACAATGAAGGAAAACCAAATATTAGAGT 2083 Query 474625 AGCAATACACG-CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | |||| | | || ||| || |||| |||| ||||||||| | | ||||| | Sbjct 2082 ACAAATAAAGGACA----AAAGTACTACATTTGCACCTGAACAAATTAGTGCTATGGTAT 2027 Query 474684 TAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 ||| || |||||| ||| || || | | | ||| || ||| | |||||||| Sbjct 2026 TAGAAAAGATGAAAGAAATAGCTCAATCCTTTTTAGGAAAACCAGTTAAAAATGCAGTAG 1967 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || |||||||||||||||||| ||||| | ||||| || ||||| || |||| || Sbjct 1966 TTACAGTACCAGCATATTTTAATGATGCTCAAAGACAAGCTACAAAAGACGCAGGAACAA 1907 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||| | ||| || |||||||||||||||||||||| || || || | || |||| Sbjct 1906 TTGCTGGTTTAAATATTGTACGTATTATTAATGAACCAACTGCTGCTGCTTTAGCATATG 1847 Query 474864 GTCTTGATAAGAA 474876 || | |||||||| Sbjct 1846 GTTTAGATAAGAA 1834 >seq1378 Length=4202 Score = 194 bits (214), Expect = 1e-43 Identities = 968/1516 (64%), Gaps = 53/1516 (3%) Strand=Plus/Minus Query 591769 CATATCTGAATTCCATAAACCGAGTTCCATTAAATCTTTAATTAGATATTTGTTAATGAC 591828 ||||||| | |||||| || || | || |||||| | | || ||||| ||| Sbjct 2175 CATATCTTCGTCCCATAAGCCCCTATCGAATAGATCTTTTAACAAATGAGGGTTAACGAC 2116 Query 591829 ATAATAATCTCCTGCTAAAGTACTTCTTGAATAAATATTTTCGGTAAATGGTTCAATACA 591888 | || | ||||| ||| ||||| ||||||| || ||| | ||||||| | Sbjct 2115 AAAAAATTCTCCACTCAAAACTCTTCTATAATAAATGTTACTAGTATAAGGTTCAAAGGA 2056 Query 591889 TTCATTATATCCTTTAATTTGAGATGTACTTGCTGTTGGCATACATGTA-GTAGTTAAAC 591947 ||| |||| || |||||||||||| || ||||||||| || | ||||| ||| Sbjct 2055 TTCGTTATTCCCAAGTATTTGAGATGTAGAAGCAGTTGGCATAGGTGCAAGTAGT-AAAG 1997 Query 591948 TGTTTCTAACACCATATATCATTATCTGTTCCCGAAGAGTTTTCCAATCCCACATTCCAC 592007 || || | ||||| | | ||| | | || ||| |||||| |||||| Sbjct 1996 AATTCCTTAAACCATGTTTACGTATTTTGAGCTTTAG----TTC--ATCCCA-ATTCCAG 1944 Query 592008 TTAATT--TATCTTCACCAAGATTCCATAAATCAAACTGGAATTTACCTTTTGAAAGTGG 592065 | | || ||||| | |||||| | |||||| || | |||||| | ||| Sbjct 1943 T-ACTTACTATCTACCTTTTTATTCCACATATCAAATTGTAGAATACCTTGACTAGCTGG 1885 Query 592066 ACTTCCCCAAAAGGTTTCATATGGACCA-GATTCTTTGGCCATTTGTAATGA---TTCTG 592121 ||| ||| | | | |||||| || ||| || || ||| | | || | || |||| Sbjct 1884 ACTACCCTGATAAGATTCATAAGGTCCATGAATCATTG-CTAATTCCATAGACATTTCT- 1827 Query 592122 TCATTGTTCCAAAATATATAGTTTCAAATATTTTCCTATTAAGATCTCGAGCAATATCAG 592181 | | || | || || ||||| |||||| | ||||| | ||| ||| ||| | Sbjct 1826 --AAAGCAGCATAGTACATGGTTTCGAATATTCTTCTATTCAACTCTTTAGCTTCATCCG 1769 Query 592182 AATCAAATGGA-ATTTTAAATATAGCAAACAC--ATCGGCTAATCCTTGTACACCAACGC 592238 | ||| | ||| || | ||| |||| | | ||| ||||| || || ||||| | | Sbjct 1768 ACTCATAGGGATATCTCAAA---AGCATAAAAGTATCTGCTAACCCCTGAACACCTATAC 1712 Query 592239 CAATAGGTCTATGGCGTAAATTTGAAACACGTGTTTTTTCTACTGGATAATAATTTACAT 592298 | ||||||||||| | || || || | || || | || ||||||||| | Sbjct 1711 CTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAGGGTAATAATTTCTTT 1652 Query 592299 CAATAATATTATTTAAATTTCTTGTAATAATTCTTGCGACCTTGTACAATTTATTATAAT 592358 |||| || |||| || |||||| ||||||||| ||| | | || ||||| ||| ||| Sbjct 1651 CAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCATATAATTTTTTAAAAT 1592 Query 592359 CAAACTCTGGAACACCGTTTTCATGAATAATAAATTTAGGTAAACAAATTGATGACAAAT 592418 ||| ||| ||| || | | |||||| |||| ||| || | | || Sbjct 1591 TAAATTCTTTTT-----TTTCCAAGTCCAC-AAATTTGCATAAAGCAATAGAAGCAAGAT 1538 Query 592419 TACAAACTGCATATTCATCTGCAGATGAGAATTCTACAATTTCACAACAAAGATTTGAGC 592478 |||| || ||| |||||| | || | | || | |||||||||||| | ||| | Sbjct 1537 TACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACACAAATTACTAC 1478 Query 592479 CATTAATTACGCCTATATTAATCTGATTTGATTTTTGATTGATAGCATCTTTAAACAATA 592538 || || |||| ||| | ||||| ||||| ||| | |||||| | || | Sbjct 1477 ATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTCTTTATATAACA 1418 Query 592539 TGTATGGTACACCTGTTTCAATTTGTGTTTCCATTATTTTAAACCATAAATCTCTTGCT- 592597 | ||||| ||||||||||||||||| ||| | ||| ||||||||||||| |||| Sbjct 1417 TATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAAATCTTGTGCTA 1358 Query 592598 -TTGATTTGTTTTATAAATCTACCCTCATTTTCATATTTAAGATAAGCTTTATTAAATTC 592656 | | || |||| | || || | |||||| |||| ||| ||| | |||||| Sbjct 1357 ATACAGTTTTTTTGCCCA--TATTTTCTTCTTCATACTTAACATATAATTTTTCAAATTC 1300 Query 592657 TTCACCATATTTTCCTACAATATCTGGACATTGTGATGGACACATAAGTGACCAATTTTC 592716 |||||| || || | | |||| |||| ||||||||| | | |||||||| Sbjct 1299 TTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTAAAGTCCAATTTTG 1240 Query 592717 ATCTTTTTCAACACGATCCATGAAAATATTATTAATCATTAATCCAAGGAATAAATCTCT 592776 || || || || | | |||||| | | | || | | || || |||||||| Sbjct 1239 ATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATAAAACAAATCTCT 1180 Query 592777 GGCTCTTTCCGTTTCAGCACCAGTATTTTTCTTTAGATCAAGGAAGAAAAATATATCACC 592836 |||||| ||| ||| |||||| ||| ||| | || |||||||| Sbjct 1179 TGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTCGAATATATCTGA 1120 Query 592837 ATGCCAAGGTTCAATAAATACCGCAAATGAACCAGCTCTTTT---ACCACCTTGATTCGC 592893 |||||| ||||||||| | || ||||| ||||| |||||| || ||||||| | Sbjct 1119 ATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCCTCCTTGATCTAC 1060 Query 592894 ATATCTGGCTATGTCATTATATATTGATAATA---CTCTCAATCCGTTAGATGTACCTTG 592950 |||||| ||| | |||||| | | | ||| | | | ||| || || | || | Sbjct 1059 ATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCATTTGAAATTCCATT 1000 Query 592951 AGTAGAACTAATATAAGCTCCTTCAACCCGAACAT-TAGACATATTAATACCTATACCTC 593009 ||| |||||||| | || | | | || | | | | | ||||||||| | Sbjct 999 CGTACCTCTAATATACGAATTTTGTCCTCTTATATCTTGTACTGCT-ACACCTATACCAC 941 Query 593010 CCGCAAATTTACTAATAACAGCACAATCTTTCCAAGATTCACCTAATGATGTCATATCAT 593069 | || ||||||||||| |||||| | ||| | ||| || | || || Sbjct 940 CAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATACCTTCTATTGAAT 881 Query 593070 CT-TTTACACCCATTAA--AAAACAACTTGATAATTGTTCATAAGGAGTACCCGCATTAA 593126 || || || || || ||||||| || | ||| ||||||||| | ||||| Sbjct 880 CTGATTTCATAGATAAAAGAAAACAAGACGACATTTGGGGTCTAGGAGTACCAGAATTAA 821 Query 593127 ATAAAGTTGGAGTTGCATGAGTAAAATATCCTTCTGATAACATTTCATATGTTTCAAAAA 593186 |||| ||||| || |||||||| |||||| || || | || | ||| ||||| || Sbjct 820 ATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGATAAGTTTCTAATG 761 Query 593187 TTTTAGATAAATTGCCTGTTCTATAATGTAGTGCAATAGCTACTCGCATCCATAAATGTT 593246 |||| || | | || || ||||| | || | ||||| ||| ||||||||| Sbjct 760 CTTTATCTATA-----TCATCAAT-ATGTATACCTATCGATACTCTCATTAATAAATGTT 707 Query 593247 GAGGTCTTTCTACAAT 593262 | |||||||| | ||| Sbjct 706 GTGGTCTTTCAATAAT 691 >seq3920 Length=5462 Score = 174 bits (192), Expect = 1e-37 Identities = 330/484 (68%), Gaps = 15/484 (3%) Strand=Plus/Minus Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTAT 475844 ||||||| || || |||||||| ||||| | || || ||| | |||| || | ||||| Sbjct 2424 AAAGTGTGAACCCAGATGAAGCAGTTGCTTTAGGTGCAGCTATACAAGGAGGTGTTTTAA 2365 Query 475845 CAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCAT 475904 ||| ||||| |||| || | | ||| | || || | ||| | |||| Sbjct 2364 AAGG-----------AGAAA-TAAAAGATTTACTTCTTTTAGATGTTATTCCTTTATCAT 2317 Query 475905 TAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCC 475964 ||||| | ||||| | || || | | ||||| | ||| | |||||||| | |||| Sbjct 2316 TAGGTATAGAAACTTTAGGTGGTGTATTTACTAAATTAATTAATAGAAATACAACAATCC 2257 Query 475965 CATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCC 476024 || || ||||| || |||||||||| | | ||||| |||||| || | || Sbjct 2256 CAACAAAGAAATCGCAAATATTTTCCACAGCTGCCGATAACCAAACACAAGTTAGTATTA 2197 Query 476025 AAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATC 476084 || | | | |||| |||||| || | ||| |||||||| | | || ||||| || Sbjct 2196 AAGTTTATCAAGGAGAAAGAGAAATGGCTAGTGATAATAAAATGTTAGGCTCTTTTGATT 2137 Query 476085 TTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTG 476144 | | |||||||| ||||| || ||||| ||||| |||||||||||||| || ||| ||| Sbjct 2136 TAGTTGGTATTCCACCTGCACCTAGAGGTGTTCCACAAATTGAAGTTACATTCGATGTTG 2077 Query 476145 ATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATA 476204 |||| |||| ||| |||| | | ||| ||||||| | || || | || | | Sbjct 2076 ATGCTAATGCAATTATTAACATATCCGCTATTGATAAAATGACAAATAAAAAACAACAAA 2017 Query 476205 TAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATG 476264 | |||||| ||| | | ||||| | || | | ||||| ||||| || |||||| | | Sbjct 2016 TTACTATT-CAA--AGTAGTGGTGGTTTGAGTAAAGAAGAAATTGAAAAGATGGTTCAAG 1960 Query 476265 AAGC 476268 |||| Sbjct 1959 AAGC 1956 Score = 158 bits (174), Expect = 8e-33 Identities = 140/175 (80%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 290828 CCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCA 290887 ||| ||| ||| | ||||||||||||||| || ||||||||||||||||| | ||||||| Sbjct 2958 CCAAATGCTAAAGCAGCTGCTGTTGGTTCGTTAATAATTCTTAATACATCTAAACCTGCA 3017 Query 290888 ATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTA 290947 ||||| | | |||| ||||| || | ||| | |||||||||||| || || |||||| Sbjct 3018 ATTTTACCTGCATCTTTTGTTGCTTGTCTTTGAGAATCATTAAAATATGCTGGTACTGTA 3077 Query 290948 ATAACAGCtttttccactttctttttcaaataattttctgccatttgttttattt 291002 |||||||||| | |||||| || |||||||||||||| ||| ||| |||| Sbjct 3078 ATAACAGCTTGATGCACTTTTCTTCCTAAATAATTTTCTGCAGTTTCTTTCATTT 3132 Score = 136 bits (150), Expect = 3e-26 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG 474706 ||| ||| ||||||| ||||| | | || |||| ||||||||| |||| || Sbjct 3175 AAAAAATATTCACCGAGTCAAATAGGTGCTTGTGTATTAGAAAAAATGAAAGAAACTGC- 3117 Query 474707 AGCTCAT-ATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAA 474765 || || || | ||| | |||| | | || || ||||| || |||||||||||||| Sbjct 3116 AGAAAATTATTTAGGAAGAAAAGTGCATCAAGCTGTTATTACAGTACCAGCATATTTTAA 3057 Query 474766 TGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACG 474825 |||||||||| | |||||||| |||||||| || | |||||||||| | |||| ||| | Sbjct 3056 TGATTCTCAAAGACAAGCAACAAAAGATGCAGGTAAAATTGCAGGTTTAGATGTATTAAG 2997 Query 474826 TATTATTAATGAACCAACAGCAGCCGC 474852 |||||||| |||||||||||||| || Sbjct 2996 AATTATTAACGAACCAACAGCAGCTGC 2970 >seq3356 Length=7745 Score = 158 bits (174), Expect = 8e-33 Identities = 324/472 (69%), Gaps = 10/472 (2%) Strand=Plus/Plus Query 295795 GATGGACCTCCATTTGCTACAGGAACTATG-CATTATGGACATATTTTAGTCTCAACTAT 295853 ||||| |||||||||||||||||| ||| || ||||| ||| | ||| | || Sbjct 2300 GATGGTCCTCCATTTGCTACAGGA-CTACCACACTATGGTCATTTACTAGCAGGTATAAT 2358 Query 295854 TAAAGATACCATGACTAGATAT--TTAACAATGAATGGTTATCAAGTTAATATGGGAATT 295911 |||||| |||| ||||| ||| || || | ||| | ||| | | || || Sbjct 2359 AAAAGATTGTGTGACAAGATACAATTATCAGTGTAAC--TATTATGTTGAAAGAAGATTT 2416 Query 295912 GGTTGGGATTGCCATGGAGTTCCAATTGAA-ATGTTGGCTaaaaaaaCTATCGGATATAT 295970 || ||||| |||||||| | || |||||| ||| ||||| | || ||| || Sbjct 2417 GGATGGGACTGCCATGGGTTACCTATTGAATATGAAATAGAAAAAGAAAATAATATAAAT 2476 Query 295971 CACAAAGAAAGATTTATTGGAATACGGTATTGATCGTCATAATGATATTTGTCGTGATAT 296030 | ||||| ||| | | || ||||| ||| ||||||| | ||||| |||| Sbjct 2477 AAAAAAGAG-GATATCATAAAAATGGGTATAGATGTATATAATGAAAAATGTCGAAATAT 2535 Query 296031 GGTATTAAAATGTACTGATAAATGGTATTCTGATTTT-GAGAGAATTGGAAGATGGATTG 296089 || ||||||| | | || ||||| || | | | || ||||| ||||||||||||| Sbjct 2536 AGTTTTAAAATATTCAAATGAATGG-ATAAAAACTGTAGAAAGAATAGGAAGATGGATTG 2594 Query 296090 ATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAATCTGTTATTTGGTCAT 296149 || |||| ||||| |||||||| ||||||| | |||||||||| |||| ||| | Sbjct 2595 ATTTTAAAAATGATTATAAAACTATGGATACTACTTTTATGGAAAGTGTTTGGTGGGTTT 2654 Query 296150 TTAAACAACTTTATGAAAAGGAAATGATTTTTGAAGGTTATAAAGTTATGCCTTATTCTA 296209 ||| || | ||| ||| | | || | | || || |||||||||||| |||||| Sbjct 2655 TTAGTGAATTATATAAAAGAGGCTTTATATATAAATCTTTTAAAGTTATGCCATATTCTT 2714 Query 296210 CTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAATTATAAAGA 296261 | || |||||||| ||||| |||||||| ||| | ||||||||||| Sbjct 2715 GTAAATGTAATACACCCATATCTAATTTTGAGTTAAATCTTAATTATAAAGA 2766 >seq1654 Length=3355 Score = 143 bits (158), Expect = 2e-28 Identities = 130/160 (81%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| ||||||||||| || || ||||||||| | || || || ||||| || ||| Sbjct 1423 GATTTTTCTTCTCCAAATATAGCCAAAGAAATGCATGTAGGTCATTTAAGATCAACTATA 1482 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTAC--AAAGAATAA 817217 || ||||| | | |||||||| | || |||| | |||| || ||| ||||||||| Sbjct 1483 ATAGGTGATAGTATATGTAGAATTTTCGAGTTTT-TAAATGTTAA-TACGAAAAGAATAA 1540 Query 817218 ATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAAT 817257 ||||||||||||||||||||||||||||||| ||| |||| Sbjct 1541 ATCATATTGGTGATTGGGGAACACAATTTGGAATGATAAT 1580 >seq574 Length=9036 Score = 107 bits (118), Expect = 1e-17 Identities = 221/329 (67%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 318643 ATACCATTATCACCATAAACACATTGAATCAATTTATCATTAGCATTTCTTACAGTACCA 318702 || |||| || ||||| | | ||||||| | | | ||| | ||||| ||||| | | Sbjct 4322 ATTCCATCTTCTCCATATAAAAATTGAATAATATCACCATATGAGTTTCTGACAGTTCGA 4263 Query 318703 TCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCTTTGTACATAACCTGTG 318762 ||||||| || ||| ||| || | ||||| ||| | ||||||| |||||| || Sbjct 4262 TCATATTGTACCATAACATCCTCCATAGCTTTAATTAACCTCCTTTGTATATAACCAGTT 4203 Query 318763 TCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAAAAG 318822 || | |||||| ||||| | |||||||||||||| || ||||| | ||||| || Sbjct 4202 TCGGATGTTTTACATGCAGTGTCTATAATACCTTCTCTACCACCCATAGCATGGAAGAAA 4143 Query 318823 AATTCAGCAGGTCCTAAACCTTTAATAAATGAACTTGGACAAAAACCTCTAGCTAAAGCA 318882 | ||| ||| |||||| | | | ||||| ||| ||| |||||| | | | Sbjct 4142 ACTTCCTGTGGTGTTAAACCACTTAAATATGAATTTGATACAAATCCTCTACTTTCTGGA 4083 Query 318883 CTGTCATCATGTTGTGCAAACATTGGAAGAGTTCTATTATTAAATCTCTTTTGAATTCTT 318942 | || |||| || ||| ||| | | ||||| |||||| | |||||||| Sbjct 4082 CCGTAATCAAATTTAATAAAATGTGGTAATGATCTATGATTAAAACCAAAAGGAATTCTT 4023 Query 318943 TTATCTTCGACAATAACTTGACCAATACA 318971 || |||| ||| | |||||||| ||| Sbjct 4022 TTCCCTTCAACATTTTGTTGACCAACACA 3994 >seq291 Length=4955 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 330944 ATAAAATATGACATGGAGGAAGTGCCATTTTATTAATATCCACTGGATTCCATAAATTAA 331003 ||||||||||||| ||||| |||||||||| || || ||| ||||||| | | Sbjct 4146 ATAAAATATGACAAGGAGGTAGTGCCATTTGATCAAGATCTTTAACATTCCATGCACACA 4087 Query 331004 TAATAATTCTTCTATCTGTCGGATTATTTTTAATTGCTTCGATACAtttttttAATTGAT 331063 ||||||||||||| || |||| |||||| ||| | |||| ||||||||||||| Sbjct 4086 AAATAATTCTTCTACTAGTTGGATCATTTTTTATTAAATGGATAATATTTTTTAATTGAT 4027 Query 331064 CAATTCCTT 331072 ||| ||||| Sbjct 4026 CAACTCCTT 4018 >seq1821 Length=1654 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 ||||| |||||| | ||| ||||| ||||| || | | ||||||||||| |||||| Sbjct 443 GTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGAATT 502 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 |||||||||||||| || || || ||| ||||||||||| | || | ||| Sbjct 503 CCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATAGTATCCGATGGTTCAACATCA 562 Query 480729 AGGGTAATAGTTTTACC 480745 || || |||||||| || Sbjct 563 AGAGTTATAGTTTTTCC 579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267867354425960