Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1378 313 1e-80 >seq1378 Length=4202 Score = 313 bits (346), Expect = 1e-80 Identities = 1040/1578 (66%), Gaps = 80/1578 (5%) Strand=Plus/Minus Query 24983 AGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCT-TAT 25041 |||||| | | ||| || || | || || |||||||||| |||||||||||| || Sbjct 2144 AGATCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAA 2085 Query 25042 TGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGA 25101 | | | ||| ||| | |||||||| |||| ||||| || | |||||||| ||||| Sbjct 2084 T-AAATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGA 2026 Query 25102 TGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTG 25161 || |||||||| ||| | || || ||||| || ||||||| |||| || | | Sbjct 2025 AGCAGTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAG 1966 Query 25162 TTTTAATTTATCCCAA-TCTA--AATTATTATCTAACTCGATATCGTTATCATATAAATC 25218 |||| || ||||||| || | | ||| |||||| | | |||| | | ||| Sbjct 1965 CTTTAGTTCATCCCAATTCCAGTACTTACTATCTACC------TTTTTATTCCACATATC 1912 Query 25219 AAATTGTAACAATCC---ACTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTT 25275 |||||||| | || ||| |||| | |||| ||| | ||| || | Sbjct 1911 AAATTGTAGAATACCTTGACTAGCTGGACTACCCTGAT---AAGATTCATAAGGTCCATG 1855 Query 25276 TGTTATTGCCATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGC 25335 | ||||| | || | || ||||| |||||||| ||||| |||| || || Sbjct 1854 AATCATTGCTAATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCT 1795 Query 25336 TTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAGCAATTTC-CATTAAGGC--GAACGT 25392 | | || || ||||||| || | | | || || || || || || || || Sbjct 1794 TCTATTCAACTCTTTAGCTTCATC-CGACTCATAGGGATATCTCA--AAAGCATAAAAGT 1738 Query 25393 ATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGT 25452 ||||||||| |||||||| |||| || | || | ||| | || ||| | | | Sbjct 1737 ATCTGCTAACCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGC 1678 Query 25453 TTCTGATGTTGGATAGAAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTT 25512 |||| | || || ||||| | || || | ||||||||||| | || | | || Sbjct 1677 TTCTTTAATAGGGTAATAATTTCTTTCAATTATTTTATCTAGATT-TCTA-GTAATAATT 1620 Query 25513 TGTGTATTTTCTCAACTCAATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTAC 25572 | |||| |||| | ||| | ||| ||| || ||| | || | || Sbjct 1619 TTTGTAATTTC---ATATAATTTTTTAAAATTAA----ATTCTTTTTTTTCCAAGTCCAC 1567 Query 25573 AAATTTAGATAAAGCGATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGT-CAGAAT 25631 |||||| ||||||| || || || | |||||| ||||| ||| || || || || Sbjct 1566 AAATTTGCATAAAGCAATAGAAGCAAGATTACATACAGCAACTTC-ATCAGGTGAAGTAT 1508 Query 25632 ATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTCCATA-ATTCTTTTGATT- 25689 | ||| | || || ||| || || ||| |||||| || | | || ||| |||||||| Sbjct 1507 ACTCAATAATTTCACAACACAAATTACTACATTTGA-TAGTACCTAGATTTTTTTGATTC 1449 Query 25690 -ATTGCATGTATTGACAATA-TCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGA 25747 ||| | ||| ||| | ||||||||| | |||||| ||||||||||||||| Sbjct 1448 GATT--TAGCATT-ACATGAGTCTTTATATAACATATATGGAACACCTGTTTCAATTTGA 1392 Query 25748 GATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTAC--TTTCTTTACGAAGTTACCAT 25805 | ||| || ||| | ||| ||| ||| ||| ||| | |||| Sbjct 1391 CTTTGTAATATAGCAAACCATAAATCTTGTGCTAATACAGTTTTTTTGC-------CCAT 1339 Query 25806 CAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTT 25865 | | ||| | | | |||| || || || | |||| | ||| Sbjct 1338 -------ATTTTCTTCTTCATACTTAACATATAATT-TTTCAAATTCTTCACCCCATGTT 1287 Query 25866 TGCCATATTTATTGAGAATAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAA 25925 | | || | || | || ||||||||| | |||| ||||| ||||| | | Sbjct 1286 TCACTTA-GTCCTGGGCAT-TCATTTGGACACATTAAAGTCCAATTTTGATTTTCTTTTA 1229 Query 25926 CTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTT 25985 || | | ||| || || || |||| ||| | |||||||| |||||||| ||||| | || Sbjct 1228 CTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATAAAACAAATCTCTTGCTCTTAATT 1169 Query 25986 CTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTT 26045 ||||||| || ||||| ||| ||| |||||| || || || |||||||| |||||||||| Sbjct 1168 CTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTCGAATATATCTGAATGCCATGGTT 1109 Query 26046 CTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAG 26105 | | ||| | ||||||| |||||||||||||||||| ||||||||||| ||||| || | Sbjct 1108 CAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCCTCCTTGATCTACATATCTAGCTG 1049 Query 26106 TTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAA 26165 | ||||| |||||| | ||||| || || | |||| |||||| ||| || || | || Sbjct 1048 TATCATTAAAAACTCTTAACATAGGTACGAGTCCATTTGAAATTCCATTCGTACCTCTAA 989 Query 26166 TCT-TGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTT 26224 | | | || |||| ||| ||||| || | | ||| || |||||||| ||| Sbjct 988 TATACGAATTTTGTC-CTCTTATATCTTGTACTGCTACACCTATACCACCAGCTGTTTTA 930 Query 26225 GAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATT 26284 |||| ||||| | | | ||| ||||| || |||| ||| ||| |||||| Sbjct 929 CTAATAAGAGCACACTGTTTTAGTGTTTCGAATATACCTTCTATTGAATCTGATTTCATA 870 Query 26285 CCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGT 26344 ||| | ||||||||| || | ||| | || || || |||||||||||||| ||| Sbjct 869 GATAAAAGAAAACAAGACGACATTTGGGGTCTAGGAGTACCAGAATTAAATAATGTTGGT 810 Query 26345 GTAGCATGAGTATAATATCCTTCA---CTCAAAGCTGTATAAGTTTCAAGAACTTCATCG 26401 ||||||||||| ||||| || | ||||| || ||||||||| | ||| ||| Sbjct 809 GTAGCATGAGTGAAATATTTTTGAGACATCAAA--TG-ATAAGTTTCTAATGCTTTATCT 753 Query 26402 ATATTGTAATTA---CTAACT-TCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTC 26457 |||| | | || || || || ||| || | ||| | | || ||| |||| ||| Sbjct 752 ATATCATCAATATGTATACCTATCGATA-CTCTCATTA---ATAAATGTTGTGGTCTTTC 697 Query 26458 AATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAA 26517 ||| ||| | || || |||| ||||||||| ||||||| || || |||||||| Sbjct 696 AAT--AATTTTGTTGTTAATACGTAAT-AAATAAGATCTTTCTAATGTCTTAAATCCAAA 640 Query 26518 ATAATCATGATTGAAATC 26535 |||||||| ||| ||||| Sbjct 639 ATAATCATAATTAAAATC 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253017579865250