Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1601 116 5e-21 >seq1601 Length=10099 Score = 116 bits (128), Expect = 5e-21 Identities = 219/313 (70%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 47796 AATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATC 47855 |||||||||||| ||||||| |||||||| | |||||| |||| || | |||||||| Sbjct 6795 AATAACAAAATCGTCAGGTTTATCTTGTTGTAACATTAAATACATGGCATGTACATAATC 6736 Query 47856 TCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA--GATATAAACAGTCTTGC 47913 | | ||||| ||||| || | || ||||| |||||||| | ||| ||| || ||| Sbjct 6735 TTTAGCATGCCCCCAATCTCTGTATGTATCAATATTTCCTAACGTTAT-AACTGT-TTGA 6678 Query 47914 TTACCTTCAGAGATTGCTTTTAAT-GCTCTTGTAATCTTACGAGTTACAAAAGTTTCACC 47972 | || | | ||| ||| ||| | || || || || | ||| ||||| ||||| || Sbjct 6677 ACATTTTTACAAATT-CTTGCAATACCCCTAGTTATTTTCCTAGTAACAAATGTTTCCCC 6619 Query 47973 ACGTCTTGGAGATTCATGATTAAAAAGAATACCACT-ACAGGCATACATTCCGTATGATT 48031 | ||||||| |||||||||||| | || ||| | ||| | |||| ||||||| Sbjct 6618 TCTTCTTGGACTTTCATGATTAAATAATATGCCATTCACA-CAAAACATATTATATGATT 6560 Query 48032 CACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTG 48091 | | ||| || || ||| | | |||| | |||||||| | |||| || || | Sbjct 6559 CCCTATAATTTATTGTTATATAATGGGCATACAATTTTGCAATAGCATATGGTGATACAG 6500 Query 48092 GATAGAAAGGTGT 48104 |||| || || || Sbjct 6499 GATAAAATGGCGT 6487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665433923196400