Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1502 212 9e-50 seq1821 114 2e-20 >seq1502 Length=19671 Score = 212 bits (234), Expect = 9e-50 Identities = 551/828 (67%), Gaps = 20/828 (2%) Strand=Plus/Minus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| |||| ||||| |||||||| ||||||| | ||||| |||| ||| ||| ||| Sbjct 5881 ACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGAGATATCAAATCCATCCAATTAAAA 5822 Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCGTATAATAATCTATCTGCTA 17996 ||||| | | | | || | |||| | || ||| | ||| |||||||| || | Sbjct 5821 GGATTTTTTGAATAA-AAGACTTTTGA-GCATCCTAAACATTCTAACAATCTATCAGCCA 5764 Query 17997 CAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTA-GTCTGAAAGGTAGA 18055 ||||||| | ||||||||||| || ||||||| |||| | ||| || |||| | Sbjct 5763 CAAATTCAATGTATTGTGACATTAATCTTGAATTCATTCCTATCAAGTCACAA-GGTAAA 5705 Query 18056 GCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTA 18115 | ||| |||||| | |||| || || | ||||||| || || || | Sbjct 5704 GATTCACATATAAATGATCGTTCTACTTCTACTGCTTCTTTTACAATATTCTGAACAATT 5645 Query 18116 GATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGT 18175 || ||| |||||||| | || |||| || |||||| ||| || || ||| Sbjct 5644 TCTTCTGGTAATTTATTTTCCAGCAGACTATA---TATTAAACAGTTAAAGTCTGTATGT 5588 Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235 || ||||||||||| |||||||| |||||||| |||| ||| | | | || | | Sbjct 5587 AATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCATGTAATTTATTTTGT 5528 Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCG 18295 ||||| | ||| || || | ||||||| | ||| |||||||| || || || || Sbjct 5527 TTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAATATACCTTCTACACATGCA 5468 Query 18296 AACGCTATTAATCTTTCAGCAAAACTGTATT--TATTGCTCAGTATCCATTTTTGTGCCC 18353 |||| || | ||| |||||| | ||| |||| | | ||||||| |||| Sbjct 5467 TTTGCTACTATCCGTTCTGCAAAA--GAATTGGTATTATTAA---TCCATTTGGCAGCCC 5413 Query 18354 ATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTT 18413 | ||| | | |||||| | ||||| || | ||| |||| | | Sbjct 5412 ACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGAAATAAATTTAATCGCT 5353 Query 18414 CTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTT 18473 | || ||| ||||||||| | || || |||||| || |||| ||||| || | | Sbjct 5352 CCTTTTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCT 5293 Query 18474 CCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAA 18533 ||| ||||| |||||| |||||| |||| || | ||||| || || ||| Sbjct 5292 CCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAA 5233 Query 18534 ATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACA 18592 || || ||| ||||||| || |||||| || ||| | ||| |||||||| || ||| Sbjct 5232 AT-TTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACA 5174 Query 18593 TATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCATCTATATCTTTTGA 18651 | ||| || |||||||||||||| || || | ||| ||| | || | | ||| |||| Sbjct 5173 TGTTTTATAAAATGTTTTTCATTTTCATTTA-ATTTTTCAAAATCTTTCAAATCGCTTGA 5115 Query 18652 TAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 || ||| | ||||| | ||||||||| || | ||| || | ||| || Sbjct 5114 TAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATA 5067 >seq1821 Length=1654 Score = 114 bits (126), Expect = 2e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 ||||||||||| || | || || ||| || |||| |||| || || || |||| Sbjct 579 GGAAAAACTATAACTCTTGATGTTGAACCATCGGATACTATTGAGAATGTTAAGGCTAAA 520 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||||||| || ||||| || || || || ||||| ||||| || | ||| || || || Sbjct 519 ATACAAGACAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACAA 460 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 | |||||| ||||| || || ||||| || || |||||| | || || || ||| Sbjct 459 TTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCAACCCTACACTTA 400 Query 156030 GTGTTAAGATTAAGAGGCGGT 156050 || |||||||||||||| ||| Sbjct 399 GTTTTAAGATTAAGAGGTGGT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731805491132000