Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1502 291 2e-73 seq1821 156 8e-33 >seq1502 Length=19671 Score = 291 bits (322), Expect = 2e-73 Identities = 547/796 (69%), Gaps = 28/796 (4%) Strand=Plus/Minus Query 49581 GATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAAT 49640 ||||| |||| ||| ||| ||| |||||||| | || | || | |||| | | | Sbjct 5845 GATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAA-AAGACTTTTGAGCATCCTAA 5787 Query 49641 ACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCAT 49699 |||| ||| |||||||| || |||||||||| ||||||||||||||| ||||||| Sbjct 5786 ACATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCAT 5727 Query 49700 ACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttg 49759 || | || | | | ||||| | ||| |||||| | ||||| |||||| |||| Sbjct 5726 TCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTGCTTC 5667 Query 49760 tttaattatcataattatattattttttgataatttatatttaatatgattcgcatatat 49819 ||| | || | | | | | || || |||||||| || | || | |||||| Sbjct 5666 TTTTACAATATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACT---ATATAT 5610 Query 49820 taaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| ||| || |||||||| || || || ||| || ||||||||||||||||| Sbjct 5609 TAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGT 5550 Query 49880 TAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAA 49938 || || || ||| || | | ||||||| ||| || || | |||||||| | || Sbjct 5549 TAGCCCATGTAATTTATTTTGT-TTTTTAAACCAGAAAATAGCACAAAAACTACCACTAA 5491 Query 49939 AGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATC 49996 | |||||||| || ||||| ||| ||||| ||| | | || ||| | |||| ||| Sbjct 5490 ACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAA--AAGAATTGGTATT 5433 Query 49997 ATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTAT 50056 || || ||||| || |||||| ||||| ||||| | || |||||||||||||| Sbjct 5432 AT-TA--ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTAT 5376 Query 50057 AGCTTTAAAT-AATTCA-----tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAA 50110 || | |||| |||| | | ||||||| || || Sbjct 5375 TGCGTGAAATAAATTTAATCGCTCCTTTTCAT------CCTTTATATAATTATCAATCAA 5322 Query 50111 TAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCT 50170 ||| || |||| ||||| | | |||| ||||||||||| |||||||||| ||| Sbjct 5321 CAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATT-TCT 5263 Query 50171 T-GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATAC 50229 | ||||| | |||||||| || ||| | | ||||| || | || || | Sbjct 5262 TAGCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTC 5203 Query 50230 CATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTA 50289 ||||| |||||| || |||||||| || | ||| ||||||||||||||||| || |||| Sbjct 5202 CATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTA 5143 Query 50290 AATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATG 50349 | ||||| || || | |||| |||||||||||| |||||| |||||||||||| | Sbjct 5142 ATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAG 5083 Query 50350 CTACGGATTTTTTATA 50365 || | | ||||||||| Sbjct 5082 CTTCTGCTTTTTTATA 5067 >seq1821 Length=1654 Score = 156 bits (172), Expect = 8e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||||||||| | | ||| ||||| |||| || | |||||| || || ||||| Sbjct 376 AAAACCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATC 435 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || ||||||| | |||| || |||||||| || ||||| |||||||||||||||||||| Sbjct 436 CGACAATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGG 495 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| || |||||||||||| || ||||| |||| ||| || | ||| Sbjct 496 TGGAATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATAGTATCCGATGGTTC 555 Query 192486 TACTTCTAGAGTAATGGTTTTACC 192509 || || ||||| || ||||| || Sbjct 556 AACATCAAGAGTTATAGTTTTTCC 579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984388298764500