Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1502 304 2e-77 seq1821 152 9e-32 >seq1502 Length=19671 Score = 304 bits (336), Expect = 2e-77 Identities = 572/844 (68%), Gaps = 18/844 (2%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 |||| || || || | |||| ||||||||||||| ||||||||||||| | ||||| | Sbjct 5898 ATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGAGATATCA 5839 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 ||| ||| ||| ||| |||||||| | | || || | |||| | | | ||| | | Sbjct 5838 AATCCATCCAATTAAAAGGATTTTTTG-AATAAAAGACTTTTGAGCATCCTAAACATTCT 5780 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 || |||||||| ||||||||||||| |||||| |||||||| ||||||| || | Sbjct 5779 AACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCATTCCTATC 5720 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | | ||||| | ||| |||||| | ||||| |||||| |||| ||| | Sbjct 5719 AAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTGCTTCTTTTACA 5660 Query 39069 atcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACAT 39128 || | | | | | || || |||||||| || | || | ||||| |||||| Sbjct 5659 ATATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACT---ATATATTAAACAG 5603 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC- 39187 ||| || |||||||| ||||| || ||| || ||||||||||||||||||| || Sbjct 5602 TTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCA 5543 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 || ||| || | | ||||||| ||| || || | |||||||| | ||| ||||| Sbjct 5542 TGTAATTTATTTTGT-TTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAATAT 5484 Query 39248 ACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCTAAA 39305 ||| || ||||| ||| ||||| ||| | | || ||| | |||| ||| || | Sbjct 5483 ACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAA--AAGAATTGGTATTAT---TA 5429 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| || ||||| ||||| ||||| | || |||||||||||||| || | | Sbjct 5428 ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGA 5369 Query 39366 AATAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACA 39423 ||||| || || | || Sbjct 5368 AATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACTG--TAAG 5311 Query 39424 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAAT 39483 |||| ||||| | | |||| ||||||||||| |||||||||| | | ||||| | Sbjct 5310 TTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTCCGTTA 5251 Query 39484 ACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 |||||||| || ||| | | ||||| || | || || |||||| ||||| Sbjct 5250 TTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTG 5191 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 39603 | || |||||||| |||| ||| ||||||||||||||||| || ||||| ||||| || Sbjct 5190 CAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAAT 5131 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 || | |||| |||||||||||| |||||| ||||||||| || ||| | | ||||| Sbjct 5130 CTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTT 5071 Query 39664 TATA 39667 |||| Sbjct 5070 TATA 5067 >seq1821 Length=1654 Score = 152 bits (168), Expect = 9e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || ||| ||||| |||| || | |||||| ||| || ||||| Sbjct 376 AAAACCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATC 435 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || || | || | | || || |||||||| || ||||| |||||||||||||| ||||| Sbjct 436 CGACAATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGG 495 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| |||||||| || |||||||||||| || ||||| |||||||| || | ||| Sbjct 496 TGGAATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATAGTATCCGATGGTTC 555 Query 172019 TACTTCTAGAGTAATGGTTTTACC 172042 || || ||||| || ||||| || Sbjct 556 AACATCAAGAGTTATAGTTTTTCC 579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905053745766000