Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq694 174 5e-38 seq1207 167 7e-36 seq1378 143 8e-29 seq170 102 2e-16 >seq694 Length=12044 Score = 174 bits (192), Expect = 5e-38 Identities = 345/499 (69%), Gaps = 15/499 (3%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| ||||| | | ||||| ||||| ||||||||||| |||| || || | || Sbjct 5372 ATCAAATCTACCTGGTCTAGTTATAGCTGGATCTAATATATCTACTCTATTAGTACCAGC 5313 Query 288912 CAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGAT 288967 || | |||| || ||| | | | | ||| |||||||| ||| ||||| | Sbjct 5312 TAAAATGACAACTTTATCATTAGATGTA-TGAAAACCATCCATTTCGACTAACATTTGGT 5254 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG--AATCACCCGAATCGCTCCtttt 289025 | | ||| | ||| || ||||||||| ||||| | |||| || | | || |||| Sbjct 5253 TTAATGTATTTTCTCTCTCATCATTTCCACCTCCCGCAAATCCTCCTTTT-GATCTTTTT 5195 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 || || || ||||| ||||| ||||| ||||| | | | |||| || || ||| || Sbjct 5194 CTT-CCTACTGCATCTATTTCATCAATAAAAATTATAGATGGAGCATGTTTTCTTGCTTG 5136 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||||||||||||||| | |||| ||||| ||| ||| ||| ||| | ||| ||| Sbjct 5135 AGCAAATAATTCTCTTACTCTTGATGGTCCAATACCTACAAACACTTCGATAAAATCACT 5076 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | | | || ||| | ||||| ||||| ||||| ||||| | || || | ||| Sbjct 5075 TCCACTAATATTAAAGAAAGGAACATTAGCTTCTCCTGCAACTGCTTTAGCTAGTAATGT 5016 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 || |||||||| |||| || |||||| | |||||||||| |||||| ||| || Sbjct 5015 TTTCCCTGTTCCTGGTGCACCACATAATAGTGCACCCTTTGGTATTTTTGCTCCA--AGT 4958 Query 289266 CTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || ||||| || | |||||||| ||||||| |||| | ||| | |||||| Sbjct 4957 ATTTCGTATTTAGATGGATTTTTTAAAAAGTCTACAAATTCCATTATTTCTTCTTTTGCT 4898 Query 289324 T-CATCACATCCTGCTACA 289341 | ||| | ||||||||| Sbjct 4897 TGTTTCATA-CCTGCTACA 4880 >seq1207 Length=28247 Score = 167 bits (184), Expect = 7e-36 Identities = 240/336 (71%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || |||||| || || ||||||||||| |||||||| | | ||| |||| || || | Sbjct 1337 CTTCTTTTTGATCCTACTGCATCAATTTCATCAATGAAGACAATACATGGAGCATGTTTT 1396 Query 289078 CTCGCA-ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTAC 289136 | ||| |||| ||||| |||||||| | ||| || | |||||| |||||||| | Sbjct 1397 TTAGCAGATTG-AAATAGTTCTCTTATTCTTCTTGCACCTACACCAACGAACATTTCTTC 1455 Query 289137 AAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 |||||| ||| | ||| |||||| || | ||||| ||||| ||||||| || || || Sbjct 1456 AAATTCTGAACCCGATGCTTGAAGAAAAGGCACATTAGCTTCACCTGCTATGGCTCTAGC 1515 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 | | ||| || ||||| || ||| ||| |||||| | ||| || |||| |||||| Sbjct 1516 AATTAATGTTTTTCCTGTGCCTGGTTCTCCTGATAATAGTATTCCTTTAGGTAATTTTGC 1575 Query 289257 CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATA 289316 || || |||| || | | |||||| | || | |||||| ||||| || | Sbjct 1576 ACCTATTTTTGTAAATTTATCTGAATTTTTTAAATAATCAATAATTTCTTCAAGCTCTTG 1635 Query 289317 TTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| | |||||||| ||| |||||| ||||| || Sbjct 1636 TTTTACTTCATCACAACCTTTTACATCTGCAAAGGT 1671 >seq1378 Length=4202 Score = 143 bits (158), Expect = 8e-29 Identities = 732/1153 (63%), Gaps = 38/1153 (3%) Strand=Plus/Minus Query 155399 AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTC-C 155457 ||| || || ||||| |||||||| || ||||| | || | |||||| | || | | Sbjct 1743 AAAAGTATCTGCTAACCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACAC 1684 Query 155458 TGCTTGTCTTCTTGTTT-GGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACC 155516 | ||| |||||| | |||||| |||| ||||| || |||| || |||| || Sbjct 1683 T--TTGGCTTCTTTAATAGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTA 1626 Query 155517 AATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATG---TTTTATCCTCATTTACA 155573 | | || || | || |||||| | | | |||| |||| ||| | ||| Sbjct 1625 ATAATTTTTGTAATTTCATATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGTCCACA 1566 Query 155574 AACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT 155633 || | | | | ||||||| || ||||||||||| ||| || | | || | |||| Sbjct 1565 AATTTGCATAAAGCAATAGAAGCAAGATTACATACAGCAA-CTTCATCAGGT-GAAGTAT 1508 Query 155634 TCT--ACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAG 155691 || | ||| ||||| |||| ||| || ||||| || |||| ||| || || || | Sbjct 1507 ACTCAATAATTTCACAACACAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCG 1448 Query 155692 ATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGT 155751 ||||| ||||| | || || |||| || ||||| ||||| || || || | Sbjct 1447 ATTTAGCATTACATGAGTCTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTT 1388 Query 155752 CCAGAATCTTTAGCCAGAGGTCACGGGC--ATTAATTTGCTTGTTG----TATCTGCCTT 155805 | || | ||| | || | || || | || || ||| ||| | | || Sbjct 1387 GTAATATAGCAAACCATAAATCTTGTGCTAATACAGTT--TTTTTGCCCATATTTTC-TT 1331 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 | ||||| || | ||| | || | || ||||| | ||||| ||||| | Sbjct 1330 CT---TCATACTTAACATATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTG 1274 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATA 155925 |||| | || || || | | | |||| ||| ||| | |||| | | ||| || | Sbjct 1273 GGCATTCATTTGGACACATTAAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACA 1214 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 ||| |||||| |||||| || | || ||||| || | || || | ||| |||| Sbjct 1213 AGTCAGGAACCCAAACAGCATAAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGAT 1154 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 | || | || ||||| ||||| ||||| | ||| ||| || | ||| | ||||| Sbjct 1153 TTTTTCTTAAATCTAAAAATTCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAA 1094 Query 156046 AACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || ||| || || || || || ||||||||||| | ||| || | ||| || || | Sbjct 1093 AAGAACCTTTTCTTTTTCCTCCTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTC 1034 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 || |||||| | | ||||| ||| | ||||| || || | ||||| |||| | Sbjct 1033 TTAACATAGGTACGAGTCCATTTGAAATTCCATTCGTACCTCTAATATACGAATTTTGTC 974 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 | | || || | || || |||||||| | |||| ||| |||| || | Sbjct 973 CTCTTATATCTTGTACTGCTACACCTATACCACCAGCTGTTTTACTAATAAGAGCACACT 914 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 |||| || | ||| |||||||| || ||||| || ||| |||| ||| | || | Sbjct 913 GTTTTAGTGTTTCGAATATACCTTCTATTGAATCTGATTTCATAGATAAAAGAAAACAAG 854 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 | | ||| |||| || || |||| || |||| ||| ||||| |||||| | |||| Sbjct 853 ACGACATTTGGGGTCTAGGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAAT 794 Query 156343 ACTTATTAGACATATAATCGTATGTCTC-----CTTAATCT-TCTCAAGATTAGACCCGT 156396 | || | |||||| ||| || || || ||| |||| | ||| | || | Sbjct 793 ATTTTTGAGACATCAAATGATAAGTTTCTAATGCTTTATCTATATCATCAATA------T 740 Query 156397 GAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAA 156456 | |||| || || || ||||| | | ||| || || | || | ||| | || Sbjct 739 GTATACCTATCGATACTCTCATTAATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAA 680 Query 156457 TTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCAC 156516 | || | | || | | ||| | || ||||| || ||||||||| | |||||||| Sbjct 679 TACGTAATAAATAAGATCTTTCTAATGTCTTAAATCCAAAATAATCATAATTAAAATCAC 620 Query 156517 GGTTGTAATCAAT 156529 | | |||||||| Sbjct 619 GTGTATAATCAAT 607 >seq170 Length=9591 Score = 102 bits (112), Expect = 2e-16 Identities = 335/515 (65%), Gaps = 22/515 (4%) Strand=Plus/Plus Query 233275 ACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTTGA 233334 ||| || | |||||||||||| | |||||||||||||| ||| ||||||||||| |||| Sbjct 5179 ACCATGTGAAATCATACAATCTCTTTCCATTTCACCAAAACGTAGACCACCATCTCTTGA 5238 Query 233335 CCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTAAT 233394 || || | || |||||| || | | |||| || || | | | || || Sbjct 5239 TCTTCCTTCTGTTGGTTGACGTGTAATCATAGTTAAAGGTCCTCTACTTCTAGCATGTAT 5298 Query 233395 TTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTCTGC 233454 |||||||| ||||||||| || | || ||||||| |||||||||||| | || || Sbjct 5299 TTTATCTTCAACCATATGTTTTAACCTTTGATAATAAGTCGGACCAATAAAAATTTTTGA 5358 Query 233455 GTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTACCCGATGAATTGTAACC 233514 | ||| || |||| | || | ||||| | ||||| || || | || || Sbjct 5359 TTTTAACATTTTCCCATTATGTCCATTATATAATATATCATTTCCATATTTCTCATATCC 5418 Query 233515 -AATATCT----TTTAATAGAGAACCAAATACCTGATGCTTTGGACCTTTATTAGCAAAC 233569 ||| | | |||| | || || | | ||| || | | | |||| ||| Sbjct 5419 TAATTTATGCAATTTATTTGA-----AATTTCTTGA-ACTGT-----TATTTTAGAAAAT 5467 Query 233570 GCAGTACAATCACCAAAACCACCATACGTCGCACACGCTTTACCCATTAAAGTTTCTATC 233629 | || ||| || || || | | || | |||| || ||| ||||| Sbjct 5468 GGTGTTGCATCCCCTTCACTTCCTTCTATTGCTGCCACTTTTCCTGACAAACATTCTACT 5527 Query 233630 AACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAATTAAATCTGGACGT 233689 || || || |||||||| | | ||| | ||| |||||||| ||||||| ||||||| | Sbjct 5528 AAATGCCCAATAGTCATACGAGATGGAACAGCATGTGGATTCATAATTATATCTGGATAT 5587 Query 233690 ACTCCCTCCGATGTAAAAGGCATATCTT--TTTCAGGGAT-TATCAGTCCAACTGTTCCC 233746 || || || |||| |||||||||| ||| || | | | ||| | ||| ||| Sbjct 5588 GTACCATCTGAACTAAATGGCATATCTTCAATTC---TATATGTAATTCCTATTGTACCC 5644 Query 233747 TTTTGGCCGCATCTACTACAGAATTTATCACCCAT 233781 ||||| || |||||| ||||||||||| || Sbjct 5645 TTTTGTCCATGTCTACTTGCAAATTTATCACCTAT 5679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471680504789990