Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq291 125 9e-24 seq170 98.7 1e-15 >seq291 Length=4955 Score = 125 bits (138), Expect = 9e-24 Identities = 312/467 (67%), Gaps = 19/467 (4%) Strand=Plus/Plus Query 168656 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTG 168715 ||| ||||| || || ||||| ||||||||||| ||| || ||| |||||| | | Sbjct 3938 TGACTTAGGACCTATATATGGTTTTCAATGGAGGCATTTCGGTGCTGAATATACAAA-TA 3996 Query 168716 TG-ATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTAC 168774 || || | | || | ||||||| || ||||||| | | ||| || || Sbjct 3997 TGCATGCCAACTATGAAGATAAAGGAGTTGATCAATTAAAAAATATTATCCATTTAATAA 4056 Query 168775 ACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT---TGGGATGTACCACAACTTG 168831 | || |||| | ||||||||| || || | || ||| |||| | | |||| Sbjct 4057 AAAATGATCCAACTAGTAGAAGAAT--TATTTTGT-GTGCATGGAATGTTAAAGATCTTG 4113 Query 168832 ATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATG----TAAGGAAAAAA 168887 || |||||| || || |||||||| | |||| |||||||||| | | | |||| Sbjct 4114 ATCAAATGGCACTACCTCCTTGTCATATTTTATGCCAATTTTATGTTTTTGATGGAAAAT 4173 Query 168888 TCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTAT 168947 | ||| | ||| |||||||||| ||| ||||||||| |||||||| |||| | Sbjct 4174 T--ATCATGTATT-----ATGTATCAAAGGTCATGTGATTTAGGTTTAGGAGTCCCTTTT 4226 Query 168948 AATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACGCCT 169007 ||||||| | |||||| | || || | | || | || ||||||||| |||| Sbjct 4227 AATATTGCCTCCTATTCAATATTCACTCATATGATTGCACAAGTGTGTAATTTACAGCCT 4286 Query 169008 GGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTA 169067 | | |||| || |||| ||| ||| ||| || || ||| || ||| |||| ||| Sbjct 4287 GCACAGTTCATACATATTTTAGGAAATGCACATGTTTATAATAATCATATTGACAGCTTA 4346 Query 169068 AAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 || || || || || || | ||| || | || |||| | ||||||| Sbjct 4347 AAAGTACAGTTAAATAGGATACCCTACCCCTTCCCAACTCTTAAATT 4393 >seq170 Length=9591 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 193786 AAAAT--AAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGA 193843 ||||| ||||||||||| || || ||||||||||| | | |||||||||||| | || Sbjct 5362 AAAATCAAAAATTTTTATTGGTCCGACTTATTATCAAAGGTTAAAACATATGGTTGAAGA 5303 Query 193844 TAAAATGCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTG 193902 |||||| |||||||||||| |||| | |||| ||||| || ||||||| | Sbjct 5302 TAAAATACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-CGTCAACCAACAGAAG 5244 Query 193903 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTAT 193954 | | || || ||| ||| || | ||||| |||||||| | ||| ||||| Sbjct 5243 GAAGATCAAGAGATGGTGGTCTACGTTTTGGTGAAATGGAAAGAGATTGTAT 5192 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 193020 GGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGACAGTATT 193079 || ||||||||||||||||| || || |||||||| |||||||||||||||||| | Sbjct 6594 GGAATTAATGCTATTGTTGCAATTATGTGTTATACTGGATATAATCAAGAAGACAGTTTA 6535 Query 193080 ATTTTAAATAAAGCTTCTATTGAAAGAGGATTATT 193114 ||| | || | | |||||||| ||||| || || Sbjct 6534 ATTATGAACCAGTCATCTATTGATAGAGGTTTGTT 6500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119878235600