Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq260 652 0.0 seq428 401 5e-106 seq3920 194 1e-43 seq1378 156 3e-32 seq1654 109 4e-18 >seq260 Length=2304 Score = 652 bits (722), Expect = 0.0 Identities = 1130/1618 (70%), Gaps = 52/1618 (3%) Strand=Plus/Minus Query 281297 TTTTTCTTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGA 281356 || |||| | ||| || ||| | ||| || || || ||| ||| | ||||||| Sbjct 1744 TTATTCTCTTCATCCTCTGCTTTATATTTTTCTGCATCATTAACCATACGATCAATTT-- 1687 Query 281357 TCTTCAGAGAAT---CTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGT- 281412 |||||| | || || || || ||| ||||||||||||| || |||||| Sbjct 1686 -CTTCAGGGGATAACCTACCCTTATCATTGGTAATAGTAATATGATT----TTGTTTTCC 1632 Query 281413 --TGAT-TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 281469 || | || ||| | || || ||||| | ||| ||||| ||||| | |||||| || || Sbjct 1631 CGTGCTCTTCTCAACAGCTGTAACATTTAAAATTCCATTTGCATCTATATCAAACGTAAC 1572 Query 281470 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAG 281529 ||||||||| || || || | |||||||| || || || |||| |||| | || | Sbjct 1571 TTCAATTTGTGGTACTTTCCTAGGGGCAGGTGGTATACCATCTAAATGAAATTTACCTAA 1512 Query 281530 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA-- 281587 |||||||||||| || ||| || ||| || || | | |||||| |||| ||| Sbjct 1511 CAAATTATTATCTTTTGTTAATGCTCTTTCTCCTTCATATACTTGGAT--TAAC-ACACC 1455 Query 281588 -GTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTT 281646 | ||| ||||| | ||| || ||||| | | |||||| ||||| ||||| || Sbjct 1454 TGGTTGGTTATCAGCATACGTCGTAAAGATTTGACTTTTTTTTGCTGGAATAGTTGTATT 1395 Query 281647 TCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGT 281706 ||| ||||| | || ||||||| ||||||||| ||||||||||| | || | ||||| Sbjct 1394 TCTTTCAATCAATTTTGTCATAACACCACCAGCAGTTTCTAAACCTAAGGATA-AGGAGC 1336 Query 281707 G-ACATCAACTAGGACAATA--TTTTGAAGTTTTTCATCAGTTTGACCAACA-AGAATA- 281761 ||||| | || |||||| | ||||| ||| | ||| || | | |||| Sbjct 1335 ATACATCTAATA--ACAATAAATCTTGAACAG---CATTGGACTGATCACCCGATAATAT 1281 Query 281762 -GCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAG 281820 |||||||| | || ||||||||||| ||||||||||| || |||| || | | | Sbjct 1280 TGCTGCTTGTACTGCTGCACCATATGCTACAGCTTCATCTGGGTTAATAGATCTACATGC 1221 Query 281821 TTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGAT 281878 || ||| || || ||||| | |||| | ||| || ||||||||| || | ||| Sbjct 1220 TTCTTTGCCGTTAAAAAATTCTTTGATTAATGTTTG--TATCTTAGGAATTCGTGTTGAA 1163 Query 281879 CCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACT 281938 || |||||||| |||| |||||| || | |||||||| | | ||| ||| ||| Sbjct 1162 CCACCAACTAAAACAACTTCATGTACACTTTTTTTATCCATCATAGCATCTTTTAAGACT 1103 Query 281939 TTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 281998 || || || ||| | | | | || || |||| ||| | ||||| ||| | ||| Sbjct 1102 TTCTCTACTGGTACTAACGTATCCCTGAAATAGTCAATACATAACTCTTCAAATCTTGCT 1043 Query 281999 CTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT 282058 ||| | | || ||| ||||||| || ||||| || | ||||||| ||| || |||| | Sbjct 1042 CTACTTACTGTTACACTATAATCTATACCTTCAAAAAGGGAATCAATTTCGATGGTAGCT 983 Query 282059 TGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG 282118 || || || || || | | |||||| || | ||||||| ||| |||| |||| ||| Sbjct 982 TGTGTAGAGGATGACAACGTACGTTTGGCCCTTTCACATTGTGTTCTTAACCTTCTTAAT 923 Query 282119 GCTTT--TGCTGATTGATTCAAATCTGTTT---TATATTTTCTCTTGAAATCTTCAACAC 282173 ||| | | | ||||| |||||| | ||| ||||||||| |||||||| |||| Sbjct 922 GCTCTACTATTTTTTGAT--AAATCTTTACCCCTATTTTTTCTCTTAAAATCTTCTACAC 865 Query 282174 ACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAG 282233 | | | || || | ||||||||||||||||| || || | |||| ||||| || | Sbjct 864 AGAAATTAACTAGTCTGTTATCAAAATCTTCACCACCTAAGTGTGTATCTCCTGCTGTTG 805 Query 282234 CTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCAC 282293 || | |||| ||| | |||||||||| | || | || |||||| || || || | Sbjct 804 CTTTCACTTCGAATATACCATCTTCAATTGTTAACAAAGATACATCAAATGTACCTCCTC 745 Query 282294 CCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAA 282353 | | ||| ||||| | | ||| |||| | | ||||||| | |||||| || | Sbjct 744 CTAAATCGAAAATTAAAATATTTTTTTCCCCCTTTCCTTTTTTATGTAAACCATATGCTA 685 Query 282354 AAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTG 282413 || || ||||||||||||||||||||||||| ||||| | |||||||| | |||| Sbjct 684 TTGCTGCTGCAGTTGGTTCATTAATAATTCTCATTACATTCAATCCAGCAATGGTACCTG 625 Query 282414 CATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||||||| || ||||||||||| ||||||||||||||||| || |||||||| || |||| Sbjct 624 CATCTTTTGTTGCTTGTCTTTGAGAATCGTTAAAATATGCTGGTACAGTAATTACAGCAT 565 Query 282474 CTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTG 282533 ||| ||| || | | | || ||| ||| |||||| || ||||| ||||| Sbjct 564 TCTTTATGGATTTACCTAAAAATGCTTCTGCATTTTCTTTCATCTTTTGTAAAACCATTG 505 Query 282534 ATGAAATTTGTTCTGGA-GAA--TATTGCTTGGATTCATTTTGATATGATACTTCAAAAT 282590 ||||||||| ||| ||| ||| ||| ||| ||| ||| |||| ||||||| Sbjct 504 ATGAAATTTCTTCGGGATGAAATAATTTCTT---TTCCCCTTGGTATGTAACTTCAATCA 448 Query 282591 ATGGTTTATTACCAACA--TTA-ATAACTTTAAATGGCCAATATTTCATATCTGATTGAA 282647 |||||| | | | ||| | | | ||| |||||||||||| |||||||| ||| | Sbjct 447 TTGGTTTCTCATCTACACCTGACTTTACTGTAAATGGCCAATGCTTCATATCACTTTGCA 388 Query 282648 CACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTG 282707 || | || |||| | || |||||||||| ||||||||||| | |||||| | Sbjct 387 CAGATGATTCTGTAAATTTCCTTCCAATTAATCTCTTTGCATCAAATACAGTATTTTCCG 328 Query 282708 GATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATG 282767 |||| ||| |||| | || ||||||||||| || || ||||| || ||||| | Sbjct 327 GATTCCTAGCAACTTGGTTCTTTGCTGCATCTCCTATTAGTCTCTCTGTATCAGTAAAGG 268 Query 282768 AAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 282827 |||||| ||||| ||||| | ||| || ||||| || || ||||| || || || ||| Sbjct 267 CAACATACGATGGGGTTGTTCTATTTCCCTGATCGTTTGCTATAATGTCCACGTTTTCAT 208 Query 282828 TTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATTTT 282885 || ||||||||| ||||| | |||||||| || || |||||||| ||||| || Sbjct 207 TTCTCCATACACCAACACATGAGTACGTTGTTCCCAAGTCGATACCAATGGCAATATT 150 Score = 113 bits (124), Expect = 3e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 86115 TAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACC 86174 |||||| ||||| | ||||||||||||||||||||||| ||| | | |||| || || Sbjct 698 TAAACCATATGCTATTGCTGCTGCAGTTGGTTCATTAATAATTCTCATTACATTCAATCC 639 Query 86175 CGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTAC 86234 ||||| || | | ||| ||||||||||| || | || ||||||||||||||||| Sbjct 638 AGCAATGGTACCTGCATCTTTTGTTGCTTGTCTTTGAGAATCGTTAAAATATGCTGGTAC 579 Query 86235 AGTAATAACTGCTTTATTAATAGGTTT 86261 |||||| || || || || || | ||| Sbjct 578 AGTAATTACAGCATTCTTTATGGATTT 552 >seq428 Length=3574 Score = 401 bits (444), Expect = 5e-106 Identities = 1103/1666 (66%), Gaps = 63/1666 (4%) Strand=Plus/Plus Query 281236 AACTGCTTGTTTAACACTGTGAGTATAATTTTCTAATTCATTTTTAGAATCAACAGCAGC 281295 ||||| | ||| | ||| || |||||| ||||| | |||||| || || || | Sbjct 753 AACTGTTGCTTTCATACTTTGTAGATAATTGTCTAAATTATTTTTTGACTCCACTTTTTC 812 Query 281296 TTTTTTCTTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTG 281355 | || || ||||| | || |||| | || ||| || ||||||| | || || || Sbjct 813 TCTTAAATTTTTATCCTCGTCAGCAAACTTTTCAGCGTCGTTAATCATCTTTTCTATCTG 872 Query 281356 ATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA 281415 || | || ||||| || || ||| ||||||||||| || || || ||| Sbjct 873 TTCCTTTGATAATCTACCTTTATCATTGGTAATAGTAATTCCTTTAGACTTACCAGTTCC 932 Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || | || |||| | |||||||| ||| | | ||||||||||||||| Sbjct 933 TTTGTCTTCTGCTTCAACATGTAATATACCATTCTTATCAACAGTAAATGTGACTTCAAT 992 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || ||||| || |||||||| || || || | |||| |||| | || Sbjct 993 TTTTGGTACACCTCTTTGTGCAGGTGGAATACCAGATAATTCAAATTTTCCTAATAAATG 1052 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 ||||||||| || ||| |||||| || || |||| ||| || || | | ||| || Sbjct 1053 ATTATCTTTTGTTAATGCTCGTTCTCCTTCAAAAACTTGAATTAAGACAGCTGGTTGGTT 1112 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 281655 |||| |||||| | |||| | |||||||| || || ||| ||||| | ||| Sbjct 1113 ATCTTGATAAGTAGAAAATGTTTGTGATTTTTTTGTTGGTATAACTGTATTTCTTTTAAT 1172 Query 281656 AATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 281715 || | |||||||| |||||| | ||||| | ||| | || | ||||| ||||| | Sbjct 1173 AAGTTGAGTCATAATCCCACCAACAGTTTCAATACCTAAAGTCAATGGAGTTACATCTAA 1232 Query 281716 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 281775 || || | || ||| | || ||| || | || |||| ||||||| ||||| Sbjct 1233 TAAAACTACATCTTGTAATTCTTC---------TCCTAAAATAATACCTGCTTGGATAGC 1283 Query 281776 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 281835 ||||||||| || ||||||||||| ||||||| | |||| ||| ||||||||| || Sbjct 1284 AGCACCATAAGCTACAGCTTCATCTGGATTAATTCCTCTATTTGGTTCTTTACCATTAAA 1343 Query 281836 AAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 ||||| | || | |||| | ||||| ||||| | ||| || || ||||| || || Sbjct 1344 AAAATCTTTAATTATTTGTTGAATTTTAGGTATACGTGTTGAACCACCTACTAAGACTAT 1403 Query 281896 TTCATGCACCTGTGATTTATCCA-GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 ||| | || | | ||| | || ||||| ||| ||| ||||||| ||| ||||| | Sbjct 1404 TTCGT-CAATTTTACTTTTTTCATATTTTGCATCATCTAATACTTTTTTAACTGGTTCTA 1462 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | ||||||| ||||| | | ||||| ||||| ||||| || | || | Sbjct 1463 AAGTTTCTCTAAATAAGTCATCATTTAACTCTTCAAATTTTGCTCTTGTTAATGTTTCTG 1522 Query 282015 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGA 282072 | ||| | || || | | | || | |||||| || |||| | ||| | ||| Sbjct 1523 AAAAATTATGACCCTCTATAATATCTTCTATTTCAATTTGAG-TTGAAT-GAACAACAGA 1580 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 282132 || | ||| || ||| | || | |||| | || | | ||| | || || Sbjct 1581 TAAATTTCTTTTTGCTATTTCTACTTCTTTTCTTAATTTTTGAATAGCTCT--CTTATCA 1638 Query 282133 ATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 282190 ||| | |||| |||| | || | || |||| || | | || | || || Sbjct 1639 GTTCTTAGATCTACATTAT-TCTTTTTTTTAAATATT-TTTATAAAATAATCCATTACCC 1696 Query 282191 TT--ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 || ||| |||||||| || || || | ||||| |||| || || ||||| ||||| Sbjct 1697 TTTGATCGAAATCTTCTCCACCTAAATGTGTATTACCTGCTGTTGCATATACTTCGAAAA 1756 Query 282249 GTCCATCTTCAAGAGACAA-AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 |||| |||| | |||| || | |||||| ||||| ||||| | || | | Sbjct 1757 CACCATTATCAATA-ACAAGAATTGATACATCAAATGTTCCTCCACCTAAGTCGTATACT 1815 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | || | | || |||| || ||||| | |||||| || ||||||||||||||| Sbjct 1816 AATATACTAGTT------TCTTCCTTCTTATCTAAACCATATGCTAAAGCAGCAGCAGTT 1869 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 |||||||||||||| | | || ||| | |||||||||| ||||||| ||||| || ||| Sbjct 1870 GGTTCATTAATAATACGTACAATATTTAAACCAGCAATTGTTCCTGCGTCTTTTGTAGCT 1929 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 |||||||| | ||| ||||||||||| || || |||| || |||| | | ||| |||| Sbjct 1930 TGTCTTTGAGCATCATTAAAATATGCTGGTACTGTAACTACTGCATTTTTAACTGGTTTT 1989 Query 282488 CCAATATAAGCGCTT--GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 282545 || || || | || ||| ||| |||||| || ||| | ||| | |||||||| Sbjct 1990 CC--TAAAAAGGATTGAGCTATTTCTTTCATCTTTTCTAATACCATAGCACTAATTTGTT 2047 Query 282546 CTGGAGAA----TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 282601 | || | | || | ||| || || || || |||| || || |||| || Sbjct 2048 CAGGTGCAAATGTAGTACTT---TTGTCCTTTATTTG-TACTCTAATATTTGGT---TTT 2100 Query 282602 CCAACATTAATAACT---TTAAATGGCCAATATTTCATATCTGATTGAACACT--TTGGT 282656 || |||| | ||| | | | || | || | |||| || | ||| ||| | Sbjct 2101 CCTTCATTGTTCACTATGTCATAAGGTAATAATGTTCTATC--CTTTACTACTTCTTGAT 2158 Query 282657 CATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG 282716 ||| ||| | ||||| ||||||| ||| ||||||| | ||| | ||||| | | | Sbjct 2159 CATCAAATTTCCTACCTATTAATCTCTTTACATCAAACACAGTCTGTGTTGGGTGTAAAG 2218 Query 282717 CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC----TCTGTAAATGAAACA 282772 ||||| | |||||||| || |||| | |||| || || ||| || ||| Sbjct 2219 TAGCTTCTAACTTGGCTGCTTCACCAA----CTTTTCTTTCCCCATCAACAAAAGATACA 2274 Query 282773 TATGATGGAGTTGTGCGATTACCTTGATCATT-CGCAATAATTTCAACTTTACCATTTTG 282831 || |||||||| | ||||||||| || || |||| ||||| ||| | ||||||| Sbjct 2275 TAGGATGGAGTAATACGATTACCTAACTCGTTATTCAAT-ATTTCCACTCTTCCATTTTT 2333 Query 282832 CCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 282877 | ||||| ||||| ||| |||| ||||| | |||||| || ||| Sbjct 2334 GAACACACCAACACAGCTATAAGTCGTTCCCAGATCAATTCCTATA 2379 Score = 132 bits (146), Expect = 4e-25 Identities = 217/310 (70%), Gaps = 17/310 (5%) Strand=Plus/Plus Query 85960 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCCAATG-TTCTAAATACTCC 86018 || ||||||||||| || |||||||||||||| || ||| || ||| ||| || || Sbjct 1702 TCGAAATCTTCTCCACCTAAATGTGTATTACCTGCTGTTGCATATACTTCGAAA-ACACC 1760 Query 86019 ATTTGAGATATTCATTAACGAAACATCTAATGTCCCAGCTCCTAAGTCATAAACAATTAC 86078 ||| ||| | | || ||||| ||||| || | |||||||| || || | || Sbjct 1761 ATTATCAATAACAAGAATTGATACATCAAATGTTCCTCCACCTAAGTCGTATACTAATAT 1820 Query 86079 GTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTGC 86138 || ||||| || ||| || || |||||| ||||| | ||| || || Sbjct 1821 ------ACTAGTTTCTTCCTTC---TTATC------TAAACCATATGCTAAAGCAGCAGC 1865 Query 86139 AGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGT 86198 ||||||||||||||| || | || || |||||| |||||| | | | || || Sbjct 1866 AGTTGGTTCATTAATAATACGTACAATATTTAAACCAGCAATTGTTCCTGCGTCTTTTGT 1925 Query 86199 TGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTATTAATAGG 86258 |||||||| || || |||||||||||||||||||| |||| ||||| || |||| || Sbjct 1926 AGCTTGTCTTTGAGCATCATTAAAATATGCTGGTACTGTAACTACTGCATTTTTAACTGG 1985 Query 86259 TTTTTGTAAA 86268 |||| |||| Sbjct 1986 TTTTCCTAAA 1995 >seq3920 Length=5462 Score = 194 bits (214), Expect = 1e-43 Identities = 828/1283 (65%), Gaps = 68/1283 (5%) Strand=Plus/Plus Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCT-TGTT-ATCTGCTTCTTCAAA 281322 ||||| ||| ||||||||||| || ||||| | |||| |||| |||| | Sbjct 1891 TTTCTGCTTCGTTTTTAGAATCGGTT--AGATTTTTCTTGTGTTGATCTTTTTCTCTATT 1948 Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATT 281382 | || ||||||| || ||| | ||||||| |||| | || | || | | | | Sbjct 1949 TAATTCAGCTTCTTGAACCATCTTTTCAATTTCTTCTTTACTCAAACCACCACTACTTTG 2008 Query 281383 AGTAATAGTAATATTCTTGGATTTG-TTTGTTGATTTATCAGCGGCAGTCACATTAAGAA 281441 | |||||||| || ||| ||| ||||| ||||||| || | | |||| || Sbjct 2009 A---ATAGTAAT-TTGTTGTTTTTTATTTGTCATTTTATCAATAGCGGATATGTTAATAA 2064 Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 | |||| ||||| | ||| ||||| ||||||||||| || || ||||| | ||||||| Sbjct 2065 TTGCATTAGCATCAACATCGAATGTAACTTCAATTTGTGGAACACCTCTAGGTGCAGGTG 2124 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 | || || | |||| ||| | || | | |||||||| ||| | || || ||| | Sbjct 2125 GAATACCAACTAAATCAAAAGAGCCTAACATTTTATTATCACTAGCCATTTCTCTTTCTC 2184 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 | | ||| || ||| ||||| ||||| ||||| | | || | ||||| | | Sbjct 2185 CTTGATAAACTTTAATACTAACTTGTGTTTGGTTATCGGCAGCTGTGGAAAATATTTGCG 2244 Query 281622 ATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTG 281681 |||| || || |||||||| ||||||| ||| | || || | | |||||| | Sbjct 2245 ATTTCTTTGTTGGGATTGTTGTATTTCTATTAATTAATTTAGTAAATACACCACCTAAAG 2304 Query 281682 TTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCAT 281741 |||||| ||| | || | |||| | ||||| | || | | || || | |||| | Sbjct 2305 TTTCTATACCTAATGATAAAGGAATAACATCTAAAAGAAGTAAATCTTTTA---TTTC-T 2360 Query 281742 CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAG 281801 | ||| | || | || |||| ||||| ||||| | ||||| |||||||| | Sbjct 2361 CCTTTTAA--------AACACCTCCTTGTATAGCTGCACCTAAAGCAACTGCTTCATCTG 2412 Query 281802 GATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT--TAC 281859 | || ||| ||| | | || |||||||| |||| | | ||| ||| Sbjct 2413 GGTTCACACTTTTTGATGGGGAATT----TTGAAAAA-TTTGTTTTACTGTTTCTGATAC 2467 Query 281860 CTTAGGAATACGAGATGAT-CCTCCAACTAATACAATTTCATGCACCTGTGAT--TTATC 281916 ||| || || | | | || || |||||||| | ||||||| | | | || || | Sbjct 2468 CTTTGGCATTCTTG-TCATACCACCAACTAAGATTATTTCATTAA--TTTCATCCTTTTT 2524 Query 281917 CAGTTTTGAATCCAATAAAACTTTT-TCAACGGGTTCAAGACCAGCTCTA---AACAAGT 281972 | |||| ||| ||| || ||| ||| || |||| | | || | || |||| Sbjct 2525 AACATTTGCATCTT-TAATACATTTCTCACAAGGATCAATA---GTTCCATGTAATAAGT 2580 Query 281973 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA---------TCAA 282023 | ||| | |||||| |||||||||||||| | | | | || || || | Sbjct 2581 CATGACATAATTCTTCTAATTTAGCTCTAGTCA-ATTTAATTTGCAAATGTTTCGGTCCA 2639 Query 282024 TTCC--TTCGAACAAAGAA----TCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 || || | | || || | || || || |||||| ||| | |||| | Sbjct 2640 GTCTGATTAGCAGTAATAAATGGTAAATTTATTTC--AGTTTGTGTCTTACTTGATAATT 2697 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT-TTGCTGATTGATTC 282136 || |||||| ||| |||| |||| |||| |||| ||| || | ||| || Sbjct 2698 CAATTTTAGCTGTTTCTGCTGCTTCTCTTAATCTTTGTAAAGCTAATTTATCATTTTTT- 2756 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196 ||||| | || | |||| |||| || ||| | | | || || || | | |||| Sbjct 2757 AAATCAATATTTTCTTTTTTCTTAAATTCTGATATAAAATATTCTAAAATTCTTTGATCA 2816 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 |||||||| ||||| || ||||| || || ||| |||||| || | || || Sbjct 2817 AAATCTTCCCCTCCTAAGGATGTATTACCATTTGTTGCTTTTACTTCAAATACACCTCCT 2876 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 || |||| || | |||| || ||||| || | ||| | | | || Sbjct 2877 AAAATTTCTAAAATAGATATATCAAATGTACCACCTCCTAAGTCATATAC---TGCA--- 2930 Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 ||| | || | | |||| || | ||| | || |||||||| || |||||||| ||| Sbjct 2931 ATTACCTTTCCATCACTTTTTTCTAATCCAAATGCTAAAGCAGCTGCTGTTGGTTCGTTA 2990 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 |||||||| || |||| | ||| |||||| | ||||||||||| || ||||||||||| Sbjct 2991 ATAATTCTTAATACATCTAAACCTGCAATTTTACCTGCATCTTTTGTTGCTTGTCTTTGA 3050 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496 ||||| ||||||||||| || || |||||||| || | |||| | |||| | |||| Sbjct 3051 GAATCATTAAAATATGCTGGTACTGTAATAACAGCTTGATGCACTTTTCTTCCTAAATAA 3110 Query 282497 GCGCTTGCTGTTTGTTTCATTTT 282519 ||| |||| ||||||||| Sbjct 3111 TTTTCTGCAGTTTCTTTCATTTT 3133 Score = 145 bits (160), Expect = 6e-29 Identities = 207/295 (70%), Gaps = 21/295 (7%) Strand=Plus/Plus Query 85960 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCCAATGTTCTAAATACTCCA 86019 ||||||||||| ||||| || |||||||||| | ||| | | |||||| || Sbjct 2814 TCAAAATCTTCCCCTCCTAAGGATGTATTACCATTTGTTGCTTTTACTTCAAATACACCT 2873 Query 86020 TTTGAGATATTCATTAACGAAACATCTAATGTCCCAGCTCCTAAGTCATAAAC---AATT 86076 | | || | | | || | ||| ||||| ||| ||||||||||||| || |||| Sbjct 2874 CCTAAAATTTCTAAAATAGATATATCAAATGTACCACCTCCTAAGTCATATACTGCAATT 2933 Query 86077 ACGTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCT 86136 || || ||| || |||||| |||| || |||| | ||| ||| Sbjct 2934 ACCTTTCCATCACTTTTTT------------------CTAATCCAAATGCTAAAGCAGCT 2975 Query 86137 GCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGA 86196 || |||||||| ||||| ||| | | ||||||||||| ||||||||| | | ||| Sbjct 2976 GCTGTTGGTTCGTTAATAATTCTTAATACATCTAAACCTGCAATTTTACCTGCATCTTTT 3035 Query 86197 GTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTAT 86251 ||||||||||| || | |||||||||||||||||||| |||||||| |||| || Sbjct 3036 GTTGCTTGTCTTTGAGAATCATTAAAATATGCTGGTACTGTAATAACAGCTTGAT 3090 >seq1378 Length=4202 Score = 156 bits (172), Expect = 3e-32 Identities = 1001/1572 (64%), Gaps = 83/1572 (5%) Strand=Plus/Plus Query 162957 CGTGATTATAATC-TAACCATTTTCGGATTCAGGACTCTAGAAAAATCTTATCTTAAAAG 163015 ||||||| |||| | | ||||| ||||| | ||| |||||| ||||||| | | | Sbjct 619 CGTGATTTTAATTATGATTATTTT-GGATTTAAGACATTAGAAAGATCTTATTTATTACG 677 Query 163016 AATCAACaaaaaaaTTGTTGAACGTCCTCAACATTTATTTATGAGAGTAGCTATTACACT 163075 || ||||| |||||| ||||| | || ||||||||||| ||||||||| | || | Sbjct 678 TATTAACAACAAAATTATTGAAAGACCACAACATTTATTAATGAGAGTATCGATAGGTAT 737 Query 163076 CCATTACAGGAAAAATGATCTCGACAGGATATTTGAAACTTATAAATATTTATCTAAAGG 163135 ||| | ||||| | || | ||| ||||||||| | | | ||| || Sbjct 738 ACAT------ATTGATGATATAGATAAAGCATTAGAAACTTATCATTTGATGTCTCAAAA 791 Query 163136 ATATTTTACTCACGCAACACCTACATTATTTAATGCTGGTACAACACATGAACAACTTTC 163195 |||||| ||||| || ||||| |||||||||||| ||||||| | ||| | || Sbjct 792 ATATTTCACTCATGCTACACCAACATTATTTAATTCTGGTACTCCTAGACCCCAAATGTC 851 Query 163196 AAGTTGTTTTTTATTGGGTATTGGT---GATTCTCTTGAAGAAATCAGTGAATGTTGGAA 163252 ||||||| | || ||| ||||| | |||| || ||| || Sbjct 852 GTCTTGTTTTCTTTTATCTATGAAATCAGATTCAATAGAAGGTATATTCGAAACACTAAA 911 Query 163253 AGAATGTGCTTTAATCAGTAAACATGCAGGAGGAATTGGAATACATATGACTA-ATATTA 163311 | | |||||| | || |||||| || || || || || || | || | |||| | Sbjct 912 ACAGTGTGCTCTTATTAGTAAAACAGCTGGTGGTATAGGTGTAGCAGT-ACAAGATATAA 970 Query 163312 GAGTTGAAGGAGCATATAT---AGCTTCAACACAAGGAGAAGCAGGTGGTTTAAGAGTTT 163368 ||| || | ||||| || | | | | ||| || ||| | | | Sbjct 971 GAGGACAAAATTCGTATATTAGAGGTACGA---ATGGAATTTCAAATGGACTCGTACCTA 1027 Query 163369 TGACTA---TTTTCAATGATATTTCAAGATACGCAAATCAAGGTGGT---AAACGACCCG 163422 || | |||| ||||||| | ||||| | | ||||||| || ||| || | Sbjct 1028 TGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAAGGAGGAGGAAAAAGAAAAG 1087 Query 163423 GTTCTTTTGCTATTTTTATTGAACCGTGGCATGGAGACATATTCTTTTTTCTTGATCTCA 163482 ||||||||||| ||| ||||||||| |||||| ||| |||||| ||| | ||| | | Sbjct 1088 GTTCTTTTGCTGTTTATATTGAACCATGGCATTCAGATATATTCGAATTTTTAGATTTAA 1147 Query 163483 AGAAAAATACTGGAGCAGAAACAGAAAGAGCCAGAGATTTATTTT-TG-GGTTTGATGAT 163540 |||||| ||| |||| | |||||| |||||||| |||| || ||||| | | Sbjct 1148 GAAAAAATCATGGCAAAGAAGAATTAAGAGCAAGAGATTTGTTTTATGCTGTTTG--GGT 1205 Query 163541 TAATGACATTTTCATGGAAAGAGTTTATAAAGACGATGTTTGGTCATTAATGTGTCCGTC 163600 | |||| | |||||| ||||||| | || | | |||| | ||||||||||| Sbjct 1206 TCCTGACTTGTTCATGAAAAGAGTAAAAGAAAATCAAAATTGGACTTTAATGTGTCCAAA 1265 Query 163601 TCAATGTCCTAATCTTCTCAATAAATACGGAGACGAATTCACCAAAGAATATCTTAAATA 163660 | |||| || || | | || || || ||||| ||| |||| |||| || Sbjct 1266 TGAATGCCCAGGACTAAGTGAAACATGGGGTGAAGAATTTGAAAAATTATATGTTAAGTA 1325 Query 163661 TGAAAGTGAAGGTATTTATTTGAAACAAA----TAAGAGCTATTGATTTATGGTT--CAA 163714 |||| ||| | | ||| | || ||| || ||| ||||||||||| | | Sbjct 1326 TGAA---GAA-GAAAATATGGGCAAAAAAACTGTATTAGCACAAGATTTATGGTTTGCTA 1381 Query 163715 GATTATGGAGTCACAAATTGAGACAGGAGTTCC--GTATGTTATGTTCAAAGATGCGATC 163772 |||| ||| |||||||| ||||| ||||| |||||||| | ||||| | Sbjct 1382 TATTACAAAGT--CAAATTGAAACAGGTGTTCCATATATGTTATAT--AAAGACTCATGT 1437 Query 163773 AATGACAAATCAAATCAAATTAATATTGGTGTTGTTAATGGTTCAAATTTATGTTGTGAA 163832 |||| ||||| ||||||| ||| | ||| | | || || ||||| ||||||||| Sbjct 1438 AATGCTAAATCGAATCAAAAAAATCTAGGTACTATCAAATGTAGTAATTTGTGTTGTGAA 1497 Query 163833 ATTGTGGAAGTATCCGACA-AAAATAATTTCTCAGTATGTAATTTATCATCAATT--TGT 163889 ||| | | ||||| | || || | | | ||||||||| | | || ||| | | Sbjct 1498 ATTATTG-AGTATACTTCACCTGATGAAGTTGCTGTATGTAATCTTGCTTCTATTGCTTT 1556 Query 163890 CTGCCGAGATTTGTTAAAATTATTGATGAAGTCCCAACTTTCAATTACCAAAAATTATTC 163949 ||| | |||||| | ||| ||| | || |||| ||||||||| Sbjct 1557 ATGC--AAATTTGTGGA----CTTG--GAAAAAAAAGAATTTAATTTTAAAAAATTATAT 1608 Query 163950 AAGATTAGTCGTATTCTCACTCGCAATCTCAATAATATTATTGACATTAATTTCTATCCT 164009 | |||| ||| | ||| | ||||| |||| || ||||| | |||| || ||| Sbjct 1609 GAAATTACAAAAATTATTACTAGAAATCTAGATAAAATAATTGAAAGAAATTATTACCCT 1668 Query 164010 CTCGATAAAACTCGGATTACCAATCTTCGTGATCGTCCTATTGGTATTGGAGTTCAGGGA 164069 | | || | | | || | || | ||||| ||||| || |||||||| Sbjct 1669 ATTAAAGAAGCCAAAGTGTCTAACAAGAGGCATAGACCTATAGGTATAGGTGTTCAGGGG 1728 Query 164070 TTGGCTGATGTATTTGCCATG--TTTAAGA-CTCCTTTTGATTCGGAAATTGCTCGTGAT 164126 || || ||| ||| ||| ||| ||| ||| | ||| ||||| ||| || Sbjct 1729 TTAGCAGATACTTTT---ATGCTTTTGAGATATCCCTATGAGTCGGATGAAGCTAAAGAG 1785 Query 164127 CTCAATCGTAAAATTTTCGAAACAATTTATTATGGAGCTTTAACAGAATCCAATAAACTT 164186 | ||| | | ||| |||||||| || || |||| |||||| | || | || | Sbjct 1786 TTGAATAGAAGAATATTCGAAACCATGTACTATGCTGCTTTAGAAATGTCTATGGAATTA 1845 Query 164187 GCTAGAGAAT-TTGGTACATATCAAACTTATCAAGGAAGTCCTATTTCTCAAGGAAAATT 164245 || | || | ||| | ||| || ||||||| || ||||| | |||||| | | Sbjct 1846 GC-AATGATTCATGGACCTTATGAATCTTATCAGGGTAGTCCAGCTAGTCAAGGTATTCT 1904 Query 164246 CCAATTTGATCTTTGGAAT--TTCGATAAATCACAATTGAGCGGAATGTGGGATTGGGAA 164303 ||||||||| | |||||| | || || || | | ||||| |||||| ||| Sbjct 1905 ACAATTTGATATGTGGAATAAAAAGGTAGATAGTAAGT-ACTGGAAT-TGGGAT---GAA 1959 Query 164304 CTTTTGCGTCAAGAAATTTTAAATCATGGTGTTCGTAATAGTCTAGTTACAACCTG---- 164359 || || ||| |||| || |||||| | | ||| ||| |||| || || Sbjct 1960 CTAAAGC-TCA--AAATACGTAAACATGGTTTAAGGAAT--TCT--TTACTACTTGCACC 2012 Query 164360 TATGCCAACTGCAAGTACTTCTCAAATTATGGGATGGAATGAATGTATTGAACCTTATAC 164419 |||||||||||| ||| |||||||| | || || |||| ||||||||||||| Sbjct 2013 TATGCCAACTGCTTCTACATCTCAAATACTTGGGAATAACGAATCCTTTGAACCTTATAC 2072 Query 164420 AGAAAATATTTATTCAAGAAGTACTATGGCTGGAGAATATTTTGTGATTAATAAACATCT 164479 || ||||||| ||||| | || |||||||| |||||| |||| ||| | Sbjct 2073 TAGTAACATTTATTATAGAAGAGTTTTGAGTGGAGAATTTTTTGTCGTTAACCCTCATTT 2132 Query 164480 CATAAAAGATCT 164491 |||||||||| Sbjct 2133 GTTAAAAGATCT 2144 >seq1654 Length=3355 Score = 109 bits (120), Expect = 4e-18 Identities = 129/175 (74%), Gaps = 10/175 (6%) Strand=Plus/Plus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 || |||| ||||||||||||||| || |||||||||||| | || ||||||||||||||| Sbjct 1420 GTTGATTTTTCTTCTCCAAATATAGCCAAAGAAATGCATGTAGGTCATTTAAGATCAACT 1479 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGA-----AATGTGTGGACACGATGTTTATC 637240 || || ||||| ||| ||||| | || || | ||| | |||| | Sbjct 1480 ATAATAGGTGATAGTATATGTAGAATTTTCGAGTTTTTAAATGTTAATACGA-----AAA 1534 Query 637241 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATAT 637295 | || |||||| | |||||||||||||| ||||| || ||| |||| |||||| Sbjct 1535 GAATAAATCATATTGGTGATTGGGGAACACAATTTGGAATGATAATAAATTATAT 1589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740273473723020