Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1378 282 1e-70 seq291 136 9e-27 seq1502 116 9e-21 seq574 107 5e-18 seq43 107 5e-18 seq1150 104 6e-17 >seq1378 Length=4202 Score = 282 bits (312), Expect = 1e-70 Identities = 610/903 (68%), Gaps = 31/903 (3%) Strand=Plus/Plus Query 110274 ATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCT 110333 || |||||||| ||||| | | || ||| |||||||| || || || | ||| | || Sbjct 607 ATTGATTATACACGTGATTTTAATTATGATTATTTTGGATTTAAGACATTAGAAAGATCT 666 Query 110334 TATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTT 110393 |||||| | ||| | || | | || |||||| | || ||||| | || | | || Sbjct 667 TATTTATTACGTATTAACAACAAAATTATTGAAAGACCACAACATTTATTAATGAGAGTA 726 Query 110394 GCGATTGGTATTCATGGACATGATAT---TAAAGCTGTTATTGAATGTTATGATGTATTA 110450 |||| ||||| ||| ||||||| |||||| ||| ||| |||| || | | Sbjct 727 TCGATAGGTATACATATTGATGATATAGATAAAGCA-TTA--GAAACTTATCATTTGATG 783 Query 110451 AGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGA 110510 | |||| | | ||||||||| || || ||||||| | || ||| | || Sbjct 784 TCTCAAAAATATTTCACTCATGCTACACCAACATTATTTAATTCTGGTACTCCTAGACCC 843 Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||| || | ||||| |||||| || || || ||||| || |||||||| | || Sbjct 844 CAAATGTCGTCTTGTTTTCTTTTATCTATGAAATCAGATTCAATAGAAGGTATATTCGAA 903 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 | || ||| | |||||||||| ||||| |||| || || ||| | || || Sbjct 904 ACACTAAAACAGTGTGCTCTTATTAGTAAAACAGCTGGTGGTATAGGTGTAGCAGTACAA 963 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCA----ACAG---CGAAGGGTGCTTCAACTGG 110683 ||||| || |||| |||| ||| | | || |||| || ||||| ||| Sbjct 964 GATAT------AAGAGGACAAAAT-TCGTATATTAGAGGTACGAATGGAATTTCAAATGG 1016 Query 110684 ACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT-- 110741 ||| || || ||||||||||| || || || || || | |||||| ||||||| || Sbjct 1017 ACTCGTACCTATGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAAGGAGGAGG 1076 Query 110742 -AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATT 110800 || ||||| || || |||||| | ||| | ||||| ||||||||||||||||| ||||| Sbjct 1077 AAAAAGAAAAGGTTCTTTTGCTGTTTATATTGAACCATGGCATTCAGATATATTCGAATT 1136 Query 110801 CTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGC 110860 ||||| | | |||||||| || |||||| ||||||| | ||||| |||||||| Sbjct 1137 TTTAGATTTAAGAAAAAATCATGGCAAAGAAGAATTAAGAGCAAGAGATTTGTTTTATGC 1196 Query 110861 AATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT 110920 | ||| || | || || ||||||||| | || |||||||| | ||| || | || Sbjct 1197 TGTTTGGGTTCCTGACTTGTTCATGAAAAGAGTAAAAGAAAATCAAAATTGGACTTTAAT 1256 Query 110921 GTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980 |||||| || | || || ||| ||| || || |||| |||||| | | || Sbjct 1257 GTGTCCAAATGAATGCCCAGGACTAAGTGAAACATGGGGTGAAGAATTTGAAAAATTATA 1316 Query 110981 CGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAAGAACTTTG 111037 | || |||||| ||||| || | ||||| ||| | ||| ||||| | || Sbjct 1317 TGTTAAGTATGAAGAAGAA---AATATGGGCAAAAAAACTGTATTAGCACAAGATTTATG 1373 Query 111038 GTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TC 111096 ||| || | || ||| ||||||| || ||| ||||| || |||||||| || Sbjct 1374 GTTTGCTATATTACAAAGTCAAATTGAAACAGGTGTTCCATATATGTTATATAAAGACTC 1433 Query 111097 ATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCT 111156 || |||| ||||| ||||||| ||| |||| || || || | |||||||||||| | Sbjct 1434 AT-GTAATGCTAAATCGAATCAAAAAAATCTAGGTACTATCAAATGTAGTAATTTGTGTT 1492 Query 111157 GTG 111159 ||| Sbjct 1493 GTG 1495 >seq291 Length=4955 Score = 136 bits (150), Expect = 9e-27 Identities = 279/404 (69%), Gaps = 18/404 (4%) Strand=Plus/Minus Query 58754 TCAATATGATTATGGTAAACGTGAGCATCTCCAATAATATG-ATGAACCAATCCAGGttt 58812 ||||||||||||| ||||| || |||| ||| | |||||| |||||| | |||| | Sbjct 4339 TCAATATGATTATTATAAACATGTGCATTTCCTAAAATATGTATGAACTG-TGCAGGCTG 4281 Query 58813 tt--ttCCTGTCTTTTTACACATTATATGAAGCAATACGGAGTATGAAACCATATTAAAA 58870 | || | ||| | || || |||||| |||| || || || | ||||||||| Sbjct 4280 TAAATTACACACTTGTG-CA-ATCATATGAGTGAATATTGAATAGGAGGCAATATTAAAA 4223 Query 58871 GGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTAGATTAAGAGTGTCATCT 58930 |||| ||| | | | ||||| | |||||| | | || || | | | || | Sbjct 4222 GGGACTCCTAAACCTAAATCACATGACCTTTGATACA-TAATACATGATAATTTTC--CA 4166 Query 58931 GCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCA 58990 | ||||||||||| |||||||||||||||||||| |||||||||| ||||| ||| Sbjct 4165 TCAAAAACATAAAATTGGCATAAAATATGACAAGGAGGTAGTGCCATTTGATCAAGATCT 4106 Query 58991 CTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCT 59050 | ||||||||||||| |||||||| | | | | || |||||||| || | | Sbjct 4105 TTAACATTCCATGCACACAAAATAATTCTTCTACTAGTTGGATCATTTTTTATTAAATGG 4046 Query 59051 TCACAATGTTTTATTTGGTCAAATCCATTAGTATATTCAGTATTGGCAT-CA-----ATG 59104 | || ||||| ||| |||| ||| | ||| |||| ||||||| || | Sbjct 4045 ATAATATTTTTTAATTGATCAACTCCTT---TATCTTCATAGTTGGCATGCATATTTGTA 3989 Query 59105 TATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCC 59148 |||| | | || ||| | ||||||||||||||||| |||||| Sbjct 3988 TATTCAGCACCGAAATGCCTCCATTGAAAACCATATATAGGTCC 3945 >seq1502 Length=19671 Score = 116 bits (128), Expect = 9e-21 Identities = 527/823 (64%), Gaps = 27/823 (3%) Strand=Plus/Plus Query 131468 TATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATT 131527 ||||| ||| | | || | || ||||| | |||||||| ||| | | | ||| | Sbjct 5067 TATAAAAAAGCAGAAGCTTCATTTTGGACAGCAGAAGAGATAGATTTATCAAGCGATTTG 5126 Query 131528 GATGATTGGGAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTC 131587 | |||| |||||||||| ||||||||| ||||| | | || | ||||| Sbjct 5127 AAAGATTTTGAAAAATTAAATGAAAATGAAAAACATTTTATAAAACATGTGTTAGCATTT 5186 Query 131588 TTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATT 131647 || || | ||||||||| || ||| | |||||| | | || ||| || | |||| || Sbjct 5187 TTTGCAGCAAGTGATGGAATAGTTTTAGAAAATTTGGCTAGTAAATTTTTAAGAGAAGTT 5246 Query 131648 GATATTCCTGAAG-TAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAG 131706 | || | |||| ||| | || || | |||||| || || || ||||||| Sbjct 5247 CAAATAACGGAAGCTAAGAAATTT-TATTCTTTTCAAATAGCAGTGGAGAATATTCATTC 5305 Query 131707 CGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATT 131766 || | || || |||||||| | | | | || ||||| | || | || || Sbjct 5306 AGAAACTTACAGTTTGTTGATTGATAATTATATAAAGGATGAAAAGGAGCGATTAAATTT 5365 Query 131767 ATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATG 131826 |||| | || || | || | || || ||||||| ||||| |||||| ||||| Sbjct 5366 ATTTCACGCAATAGAAAATATACCAGCTGTTAAAAATAAAGCTTTGTGGGCTGCCAAATG 5425 Query 131827 GATTCAAGATGATTCCGCTAATTTTTCTACAAGAC---TTGTAGCTTTTGCTTGTGTTGA 131883 |||| | | || || |||| || | || || | ||||| ||| ||||| || Sbjct 5426 GATTAA---TAATACC---AATTCTTTTGCAGAACGGATAGTAGCAAATGCATGTGTAGA 5479 Query 131884 AGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGA- 131942 ||||||||| ||| ||| ||| |||||||| || ||| |||| || | || | Sbjct 5480 AGGTATATTGTTTAGTGGTAGTTTTTGTGCTATTTTCTGGTTTAAAAAAC-AAAATAAAT 5538 Query 131943 TGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAAT 132002 | | ||| || | || ||| |||| || |||||||||| ||| ||||| || | Sbjct 5539 TACATGGGCTAACTTTTAGTAATGAATTAATTAGTAGAGATGAAGGATTACATACAGACT 5598 Query 132003 TT-GCTATATTAATCTATAGAAAATTTGCTG----ATAAACTTGATGAAAATAATATTAA 132057 || || | ||||| ||||| | ||||| ||||| | ||| | | | || | Sbjct 5599 TTAACTGT-TTAATATATAG----TCTGCTGGAAAATAAATTACCAGAAGAAATTGTTCA 5653 Query 132058 ACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGA--GTTTATTACAGAAGCTTTGCCT 132115 | || ||| |||||||| || | |||| || ||||| ||| |||| ||| Sbjct 5654 GAATATTGTAAAAGAAGCAGTAGAAGT--AGAACGATCATTTATATGTGAATCTTTACCT 5711 Query 132116 TGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGAT 132175 || | ||||| || |||||| | | ||| | ||||||||||| || |||||| Sbjct 5712 TGTGACTTGATAGGAATGAATTCAAGATTAATGTCACAATACATTGAATTTGTGGCTGAT 5771 Query 132176 CGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACCCCTATACATGG 132235 | || | | | |||| || || | | | | | |||| || | || ||| Sbjct 5772 AGATTGTTAGAATGTTTAGGATGCTCAAAAGTCTTTTATTCAAAAAATCCTTTTAATTGG 5831 Query 132236 ATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 ||||| | || || ||| |||| ||||| || || ||||||| Sbjct 5832 ATGGATTTGATATCTCTTCAAGGAAAAACAAATTTTTTCGAAA 5874 >seq574 Length=9036 Score = 107 bits (118), Expect = 5e-18 Identities = 119/156 (76%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || |||||||||||||| | ||||||||| ||| |||| ||||| || || |||| Sbjct 2710 TTTAATAGGCAACCATCTTTACATAAAATGAGTATAATGGGACATAAGGTAAAGATATTG 2769 Query 305396 TCTGGATTGACATTTCGATTAAATGTA--AGT-GCTTGTACGCCTTATAATGCGGATTTT 305452 || | |||||| |||||||| || ||| ||| | || |||||||| |||||| Sbjct 2770 CCTTATTCTACATTTAGATTAAATTTAGCAGTAACTT---CTCCCTATAATGCTGATTTT 2826 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||||||||||||| ||||| || | || ||| Sbjct 2827 GATGGAGATGAAATGAATTTGCATCTAGCACAGTCA 2862 >seq43 Length=15548 Score = 107 bits (118), Expect = 5e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 72301 AAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTTCCATCAAAGTTC 72360 ||||| |||||||||||| ||||||||||||||||| || ||||||| | | || Sbjct 860 AAATTTTCATCTTCAAAATTTTCTCCATATATACTTAAACTCCCACTTCCATTATAATTA 919 Query 72361 ACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTATGGAAAG 72409 |||| |||||||||||| | |||||| | || |||||||||||||||| Sbjct 920 ACAAAATCACCTCCTTGTATCATAAATTCTTTTATTACTCTATGGAAAG 968 >seq1150 Length=9684 Score = 104 bits (114), Expect = 6e-17 Identities = 121/163 (74%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| ||||||| |||||||| || || || ||||| || ||| ||||| | ||| Sbjct 7609 GTTTTGTTCAACAGGCAACCGTCTCTACACCGCATGTCAATCATGTGCCATAAGGCAAAA 7550 Query 305390 GTATTATCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGC 305445 ||| | ||||| || ||||| || |||| | ||| ||| | || |||||||| Sbjct 7549 GTAAT----GGATTACAAAACTTTTCGTTTCAATGAATGTGTGTGTTCACCATATAATGC 7494 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||||||||||||||||||| | |||||||| ||| || Sbjct 7493 AGATTTTGATGGAGATGAAATGAATTTACATGTACCACAAACA 7451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186702252096470