Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1378 378 1e-99 seq1502 232 9e-56 >seq1378 Length=4202 Score = 378 bits (418), Expect = 1e-99 Identities = 1015/1518 (67%), Gaps = 57/1518 (4%) Strand=Plus/Minus Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762 ||| || ||||| | |||||| ||| || ||||| | | ||||| ||||| || Sbjct 2130 ATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAAATGTTACTAGT 2071 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 ||| ||||| | ||||| ||||| || || ||||||| || || |||||||||||||| Sbjct 2070 ATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCAGTTGGCATAGG 2011 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGTGTTATG-ATTTTATCTTTTAGATGTTTCC 68881 ||| | | |||| ||| || | ||||||| ||| | ||||| ||||| | | || Sbjct 2010 TGCAAGTAGTAAAGAATTCCTTAAACCATGT-TTACGTATTTTGAGCTTTAGTTCATCCC 1952 Query 68882 AATCCCAAAGATCAGATGGTACAAC---ATTCCAAAGATCGTATTGTAGAATTCCGTTAC 68938 ||| ||| | | ||| |||||| | ||| |||||||||| || | || Sbjct 1951 AATTCCAGTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTAGAATACCTTGAC 1892 Query 68939 TTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCA--GCTAGTTC-ACA-A 68994 | || || | ||| | |||||||||||| | ||| |||| ||| | | | Sbjct 1891 TAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAA--TCATTGCTAATTCCATAGA 1834 Query 68995 CTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTATTGAGATCTTGTGC 69053 | | ||||| ||| | || || || |||||||| || ||||| ||| | |||| || Sbjct 1833 CATT--TCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-ATTCAACTCTTTAGC 1777 Query 69054 TTCTAGACTA-TCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCC 69112 ||| | | | || | ||||| ||||| ||||| | |||||| || |||||||| | Sbjct 1776 TTC-ATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACCCCTGAACAC 1718 Query 69113 CAATACCGATAGGTCTATGTCTCTTATTTGA-ACTTTCAGCTTCTGGAATAGGATAATAA 69171 | ||||| ||||||||||| ||||| || || ||||| |||||| |||||| |||||| Sbjct 1717 CTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTG-GCTTCTTTAATAGGGTAATAA 1659 Query 69172 TTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTT-TAGTTT 69230 || | || || ||||||| ||||||| | || || ||| | | | | || ||| Sbjct 1658 TTTCTTTCAATTATTTTATCTAGATTTCT-AGTAATAATTTTTGTAATTTCATATAATTT 1600 Query 69231 GAGAAAATCAAATCGTCCATCTATAACAA----ACATATTC----AGTGCTACAGATGCT 69282 ||||| |||| || | | | ||| ||| ||| | || | ||| || Sbjct 1599 TTTAAAATTAAAT--TCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAATAGAAGCA 1542 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 |||||||| || || || |||| || | ||| | || || || ||| | |||| Sbjct 1541 AGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACACAAATTA 1482 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 |||||||||||||| || ||||||| ||||| || ||||| | ||| || || Sbjct 1481 CTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTCTTTATAT 1422 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462 | ||| | ||| ||| |||||||| ||| || | |||| ||| | | Sbjct 1421 AACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAAATCTTGT 1362 Query 69463 GCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATATAGCCGTTCG 69519 || || ||| || || | | | || |||| |||||| | ||||| ||| Sbjct 1361 GC---TAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATAATTTTTCA 1305 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 ||||| || ||||| ||| | ||| || ||||||||||||||||| || | ||| Sbjct 1304 AATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTAAAGTCCAA 1245 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | || || || |||| |||||| || | || |||| ||||| ||| ||| | | Sbjct 1244 TTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATAAAACAAA 1185 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 ||||| | ||| |||||| || || ||||||| | | ||| | ||| || | ||| Sbjct 1184 TCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTCGAATATA 1125 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 || |||||||||||||| | ||| | || | || || ||| |||||| ||| Sbjct 1124 TCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCCTCCTTGA 1065 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 |||| ||||| || || | |||| | ||||| | ||| || | | ||||| || | Sbjct 1064 TCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCATTTGAAATT 1005 Query 69820 CCATTTGTTCCAGAAATATA--ACT----TCCTCTTGCGCGAATAT-TACTAATAGATAG 69872 ||||| || || |||||| | | ||||||| |||| | || | | || Sbjct 1004 CCATTCGTACCTCTAATATACGAATTTTGTCCTCTT------ATATCTTGTACT-GCTAC 952 Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 |||||| || || || ||||| || |||||||| |||| | ||| || ||||||| Sbjct 951 ACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATACC 892 Query 69933 CTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTA-TA 69990 ||||| ||| | |||| | ||| ||||||||| |||||||| | | || | Sbjct 891 TTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTG-GGGTCTAGGA 834 Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || | |||||||||||| || | || |||||||| |||||| ||| | || || Sbjct 833 GTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGA 774 Query 70051 TATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || ||||| | ||| |||||||| || | ||| || ||||||| || | ||| || Sbjct 773 TAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCATTAA 715 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 | ||| || |||| ||| | |||| || || || || | || ||| |||| | Sbjct 714 TAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAA 655 Query 70170 AGTTTTAAACCCAAAATA 70187 || ||||| |||||||| Sbjct 654 TGTCTTAAATCCAAAATA 637 >seq1502 Length=19671 Score = 232 bits (256), Expect = 9e-56 Identities = 588/886 (66%), Gaps = 45/886 (5%) Strand=Plus/Minus Query 39304 TTCT-TGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAG 39362 |||| |||| ||| || ||| ||| || || || |||| | ||| ||||||||||| | Sbjct 5919 TTCTCTGTGCCATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTG 5860 Query 39363 TTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAttttt 39422 |||| |||| | ||||| ||||| ||| ||| ||||| ||| || | | || Sbjct 5859 TTTTTCCTTGAAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTT 5800 Query 39423 ttttAAATCCTAA---TTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCA 39479 || ||||||| |||| | ||||||||| || |||||||| |||||| | || Sbjct 5799 TTGAGCATCCTAAACATTCTAA---CAATCTATCAGCCACAAATTCAATGTATTGTGACA 5743 Query 39480 TCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTT 39539 | | | ||||||||||||| | | | |||| || || || ||| | || Sbjct 5742 TTAATCTTGAATTCATTCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTT 5683 Query 39540 CGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATA 39599 | | ||||| || ||| ||| | || || || | || | | | ||| Sbjct 5682 CTACTTCTACTGCTTCTTTTA----CAATATT-----CTGAACAATTTCTTCTGGTAATT 5632 Query 39600 AATGTT---------TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTAC 39650 || || || | ||||| ||| ||||| ||||| || |||||||||| Sbjct 5631 TATTTTCCAGCAGACTATATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTAC 5572 Query 39651 TAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATA 39710 |||||||||| ||| ||| || || ||| | | | | | ||||| | ||| || | Sbjct 5571 TAATTAATTCATTACTAAAAGTTAGCCCATGTAATTTATTTTGTTTTTTAAACCAGAAAA 5512 Query 39711 TGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCT 39770 | ||| |||| ||| ||| || || |||||||| |||| ||| || | | | Sbjct 5511 TAGCACAAAAACTACCACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTT 5452 Query 39771 CTCCGTAAC---TTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTA 39827 || | || | |||| |||| ||||| || ||||| |||||| || || | Sbjct 5451 CTGCAAAAGAATTGGTATTATTA---ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAA 5395 Query 39828 CACAAGGCATTGTTTCTATAGCATTAAAGAGAT--AATGT----TTTTCATCACTATCTT 39881 || || || ||||||| || | ||| | || ||| |||||||| ||| Sbjct 5394 CAGCTGGTATATTTTCTATTGCGTGAAATAAATTTAATCGCTCCTTTTCATC-----CTT 5340 Query 39882 TAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCT 39941 || ||| |||| || |||| ||| || |||||||||| || || || | || || | Sbjct 5339 TAT-ATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTT 5281 Query 39942 GAAATCCGTAAAAACATCTT-GCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC 40000 |||| ||||| |||| ||||| || ||||| || ||| ||||| | ||| Sbjct 5280 GAAAAGAATAAAATT-TCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCC 5222 Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAA 40060 |||||||| |||||||||||||| || ||||||||||| || |||||||| |||||| Sbjct 5221 AAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAA 5162 Query 40061 TATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 40120 | |||||||| | ||||| | | || || | ||| |||||| ||||| ||| Sbjct 5161 TGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCT 5102 Query 40121 TCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATA 40166 || ||||||||||| || || ||||| ||||| || | || ||||| Sbjct 5101 TCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATAAAAGTCCCATA 5056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686846377162800