Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq627 205 7e-48 seq1502 194 1e-44 seq291 118 8e-22 >seq627 Length=3391 Score = 205 bits (226), Expect = 7e-48 Identities = 417/613 (68%), Gaps = 25/613 (4%) Strand=Plus/Minus Query 19318 ATTAAACAATTGGGATGTAAA-CATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTG 19376 || |||||||| || | |||| ||||| ||| || | | ||||| ||||| ||| Sbjct 1710 ATAAAACAATTAGG-TATAAAGCATGTGAAGGGAATTATATTATATGGACCACCAGGTAC 1652 Query 19377 TGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAA 19433 ||||||||| || ||||| ||| | | | ||| ||| | | | ||||| || Sbjct 1651 TGGAAAAACTTTGATTGCTAGACAGATAGGAAAAACGTTAAATGCTCGAGAACCT---AA 1595 Query 19434 AATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACG 19493 |||| | |||||||| ||||| ||||||||||||||||| ||||| ||||||||| | || Sbjct 1594 AATTATTAATGGTCCAGAAATATTAAATAAATATGTAGGACAATCTGAAGAAAATATTCG 1535 Query 19494 ACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTG-- 19551 | ||| ||| || |||||| |||| | |||| | | | ||| ||| ||| Sbjct 1534 AAATTTATTTAAAGATGCTGAATTAGAATATAAAC---AAAGTGGAGAAAATTCGTTGTT 1478 Query 19552 -CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---------TTC 19601 || || |||||| |||||||| | || ||||| ||||| ||||| || ||| Sbjct 1477 ACATATAATAATATTAGATGAAATAGATGCAATATGTAAACAAAGGGGGAATGCTTTTTC 1418 Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 ||| | ||||| |||| | | | || ||||| | | || ||| | || ||||| Sbjct 1417 AAGTGGTACAGGAGTCAATGATAGTATAGTTAATCAGTTATTATCTAAAATTGATGGTGT 1358 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721 || | |||||||||||| | ||||| ||||| |||||| | || ||||| || Sbjct 1357 AAATAGTTTAAATAATATTTTATTAATTGGGATGACAAATAGAATTGATTTAATTGATGA 1298 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT-TACCCGATGAAT 19780 || |||||| |||| ||| |||| ||| || | || |||| || || |||| || | Sbjct 1297 AGCTTTATTAAGACCAGGTAGGTTTGAATTACATATAGAAA-TATCTCTACCTAATAAGG 1239 Query 19781 GTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAA 19840 || | || |||| || || || |||||| || ||| || | | ||| |||| Sbjct 1238 AAGGTAGGGTTCAAATATTGAATATTCATACAAAAAATATGAGAAACAGTAATAAATTAA 1179 Query 19841 ATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAAC 19900 | |||||| || |||||||| | || | | ||| || | | || |||||| Sbjct 1178 GTCCCGATGTTAATATAGAAGAATTAGCCGAGAAAACCCCTAATTTTTCAGGAGCAGAAA 1119 Query 19901 TTGAGGGATTAGT 19913 |||| |||||||| Sbjct 1118 TTGAAGGATTAGT 1106 >seq1502 Length=19671 Score = 194 bits (214), Expect = 1e-44 Identities = 577/875 (66%), Gaps = 29/875 (3%) Strand=Plus/Plus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 ||||||| |||| ||| ||||| | | || ||||||||| | || ||||||||||| Sbjct 5036 TCCAATTTTGTATCCAGACGTATGGGACTTTTATAAAAAAGCAGAAGCTTCATTTTGGAC 5095 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA---TTAAAACCACA 43827 ||||||||| | ||||| | | || || | ||| ||| | ||||| | | Sbjct 5096 AGCAGAAGAGATAGATTTATCAAGCGATTTGAAAGATT---TTGAAAAATTAAATGAAAA 5152 Query 43828 AGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAA 43887 ||||||||||||||| || || || |||||||| || || || || ||||| Sbjct 5153 TGAAAAACATTTTATAAAACATGTGTTAGCATTTTTTGCAGCAAGTGATGGAATAGTTTT 5212 Query 43888 TGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC-ACGATGTTTTT 43946 |||||||||| |||| ||| |||||||||| || | ||||| | || |||| Sbjct 5213 AGAAAATTTGGCTAGTAAATTTTTAAGAGAAGTTCAAATAACGGAAGCTAAGA-AATTTT 5271 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 || |||||||| || | || ||||||||||| |||| |||||| | |||| |||| Sbjct 5272 ATTCTTTTCAAATAGCAGTGGAGAATATTCATTCAGAAACTTACAGTTTGTTGATTGATA 5331 Query 44007 CGTACATCAAAGATGGGCACGAGAAGC-ATCGA--TTGTTTAATGCGATAGAAACAGTAC 44063 || || || |||| | || ||| || | || ||| | || ||||||| ||| Sbjct 5332 ATTATATAAAGGATG---AAAAGGAGCGATTAAATTTATTTCACGCAATAGAAAATATAC 5388 Query 44064 CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 | || ||||| ||||||| ||||| |||||||| ||| | ||||||||| Sbjct 5389 CAGCTGTTAAAAATAAAGCTTTGTGGGCTGCCAAATGGATTAATAATACCAATTCTTTTG 5448 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG- 44182 |||||| | || || |||| ||| ||||| || || ||| || | |||| | Sbjct 5449 CAGAACGGATAGTAGCAAATGCATGTGTAGAAGGTATATTGTTTAGTGG-TAGTTTTTGT 5507 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || || || ||||| || |||| | | | | |||| | || ||| ||||| ||| Sbjct 5508 GCTATTTTCTGGTTTAAAAAACAAAATAAATTACATGGGCTAACTTTTAGTAATGAATTA 5567 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGA 44302 || ||| | |||||||| |||||| || ||| || || || | | ||| Sbjct 5568 ATTAGTAGAGATGAAGGATTACATACAGACTTTAACTGTTTAATATATAG---TCTGCTG 5624 Query 44303 GACGATAAGCCTTCATGTAAGACAAT-TACAG-ATATTGTTGTAGAGGCAGTAAAGATAG 44360 || |||| || |||| | | | ||| ||||||| ||| |||||| | ||| Sbjct 5625 GAAAATAA--ATTACCAGAAGAAATTGTTCAGAATATTGTAAAAGAAGCAGTAGAAGTAG 5682 Query 44361 AACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGA 44420 ||| | |||||| | | |||||| | || |||||||||||| | || | Sbjct 5683 AACGATCATTTATATGTGAATCTTTACCTTGTGACTTGATAGGAATGAATTCAAGATTAA 5742 Query 44421 TGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGCGATA 44477 || ||||| ||||||| | || ||| | | | || ||| | || ||| | Sbjct 5743 TGTCACAATACATTGAATTTGTGGCTGATAG---ATTGTTAGAATGTTTAGGATGCTCAA 5799 Query 44478 AACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAA 44537 || || | | | |||| || ||| ||| ||||| || || | |||| |||| Sbjct 5800 AAGTCTTTTATTCAAAAAATCCTTTTAATTGGATGGATTTGATATCTCTTCAAGGAAAAA 5859 Query 44538 CAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 |||| ||||| |||||| | |||| || |||||| Sbjct 5860 CAAATTTTTTCGAAAAAAGAGTTGCCGATTATCAG 5894 >seq291 Length=4955 Score = 118 bits (130), Expect = 8e-22 Identities = 263/395 (67%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 40875 GGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCT 40934 || ||| | ||||| ||||| | | | ||||| || || ||||| | |||| | | Sbjct 3945 GGACCTATATATGGTTTTCAATGGAGGCATTTCGGTGCTGAATATACAAATATGCATGCC 4004 Query 40935 GATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGAT 40994 | ||| |||||||| | ||||||||| | |||| || || ||| ||| Sbjct 4005 AACTATGAAGATAAAGGAGTTGATCAATTAAAAAATATTATCCATTTAATAAAAAATGAT 4064 Query 40995 CCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCA 41054 || ||| || | || || ||||| || ||||| | || | || |||||| Sbjct 4065 CCAACTAGTAGAAGAATTATTTTGTGTGCATGGAATGTTAAAGATCTTGATCAAATGGCA 4124 Query 41055 TTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAA 41114 | || ||||||||| | ||||| || ||||| |||| |||| || | |||||| Sbjct 4125 CTACCTCCTTGTCATATTTTATGCCAATTTTATGTTTTTGATGGAAAATTATCATGTATT 4184 Query 41115 TTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCT 41174 |||||||||| ||| |||| | || |||| ||||| ||||| || || ||| | Sbjct 4185 ATGTATCAAAGGTCATGTGATTTAGGTTTAGGAGTCCCTTTTAATATTGCCTCCTATTCA 4244 Query 41175 CTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACG 41234 | |||| ||||||||||||| || |||||| | |||| | || | || | Sbjct 4245 ATATTCACTCATATGATTGCACAAGTGTGTAATTTACAGCCTGCACAGTTCATACATATT 4304 Query 41235 TTAGGAGATGGACATATTTACATTAATCACATAGA 41269 |||||| ||| |||| |||| | |||||| || || Sbjct 4305 TTAGGAAATGCACATGTTTATAATAATCATATTGA 4339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397420784156350