Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1378 158 1e-33 >seq1378 Length=4202 Score = 158 bits (174), Expect = 1e-33 Identities = 801/1254 (64%), Gaps = 56/1254 (4%) Strand=Plus/Minus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 || || |||||| | |||| || ||||||||||||| ||| | || | ||| || ||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTA 130675 || | || ||||| || ||| | | | |||||||| || | || || || Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 2202 Query 130676 CCGTTGTTGGCTAT-AATTTC-GTTGCGCATACTTTTATCGTACAATCCAAGCTGTACAA 130733 || || | || || || | | ||| | ||| || || | || || | | | Sbjct 2201 CCATTATGCGCAATTAACTGCTGTTTC--ATATCTTCGTCCCATAAGCCCCTATCGAATA 2144 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 ||||||||| ||||||| |||| || ||| || ||| || || | |||| | Sbjct 2143 GATCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAAT 2084 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 ||||||| || || | ||||||||||||||||| || || | |||||| | ||||| | Sbjct 2083 AAATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAG 2024 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGT-CGTGATTTTTCGC 130912 | || ||||| ||| | || || |||||| | | ||| || | ||| ||||| || Sbjct 2023 CAGTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGT-ATTTTGAGC 1965 Query 130913 TTCAATTCATCCCAATCCCA----TAGAGAGGTAGGTTTGACATTGTTCCACATATCAAA 130968 || | ||||||||||| ||| | | || ||| || |||||||||||||| Sbjct 1964 TTTAGTTCATCCCAATTCCAGTACTTACTATCTACCTTT----TTATTCCACATATCAAA 1909 Query 130969 TTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACG 131028 |||||| || |||| ||| || ||||| | | ||||| || ||| | | Sbjct 1908 TTGTAGAATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAATCAT 1849 Query 131029 AGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATT 131088 || | || | ||| ||||| | || || ||||||||| ||| | |||| Sbjct 1848 TGCTAATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCTATT 1789 Query 131089 TAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAG 131148 || | ||| |||| | ||| || ||| || ||| | ||||||| ||||| | Sbjct 1788 CAACTCTTTAGCTTCATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAA 1729 Query 131149 ACCCTGTATCCCAACGCCCACCGGTCTATG--TTTTAAATTACATTTACGCGAACATTCG 131206 ||||| | || | || | |||||||| | || ||| || || || Sbjct 1728 CCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGC--TTCTTTA 1671 Query 131207 GTGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACG 131266 | || ||| || | ||||||||||| | || ||| | | ||||| ||| | Sbjct 1670 ATAGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAA-- 1613 Query 131267 CTTTTC----AATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTAC 131322 |||| ||||| | |||| ||| |||| | || ||||||| || Sbjct 1612 --TTTCATATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGTCCACAAATTTGCATAA 1555 Query 131323 ACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTC 131382 | || || || |||||||| || || ||| ||| ||||| || |||||| Sbjct 1554 AGCAATAGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTC 1495 Query 131383 GGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCAC 131442 ||||||||||| | || || || || | ||||| |||||| ||||||||| || Sbjct 1494 ACAACACAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATT-AC 1436 Query 131443 ATG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATC 131501 ||| ||| || || | ||| || || || ||||| | |||| ||| |||| || | Sbjct 1435 ATGAGTCTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTT--GTAATATAGC 1378 Query 131502 GAA--AGAGTTTTCGAGC--AGACAATTGATATTTG----TATTGGCCGCGTTTTTCGTA 131553 || | | | | | || | ||| || | |||| |||| | || ||| || Sbjct 1377 AAACCATAAATCTTGTGCTAATACAGTT--TTTTTGCCCATATTTTC----TTCTTCATA 1324 Query 131554 ATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACG---AACT--GTCCAAATTGGGACAT 131608 || | || || ||||||| | || || | | ||| |||| |||| ||| Sbjct 1323 CTTAACATATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCC----TGGG-CAT 1269 Query 131609 TCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCC 131668 || | |||||||||| | ||| || | || |||| ||||| ||||| || Sbjct 1268 TCATTTGGACACATTAAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCA 1209 Query 131669 GGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt 131728 || ||||| | || || |||| |||||| ||| || |||||| | |||| |||||| Sbjct 1208 GGAACCCAAACAGCATAAAACAAATCTCTTGCTCTTAATTCTTCT-TTGCCATGATTTTT 1150 Query 131729 t-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | | |||| |||||| || || || || | |||||| ||||| | ||| || || Sbjct 1149 TCTTAAATCTAAAAATTCGAATATATCTGAATGCCATGGTTCAATATAAACAGC 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424896749484240