Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1378 91.5 2e-13 >seq1378 Length=4202 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG 111034 ||||||||||| || || | ||||| ||| || |||||||| || ||| | | || Sbjct 1814 TACATGGTTTCGAATATTCTTCTATTCAACTCTTTAGCTTCATCCGACTCATAGGGATAT 1755 Query 111035 CGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGC 111094 | | | ||||| ||| || | || |||||||| | ||| |||||||| || | | Sbjct 1754 CTCAAAAGCATAAAAGTATCTGCTAACCCCTGAACACCTATACCTATAGGTCTATGCCTC 1695 Query 111095 ATATTAG--ACTTTCGCGCAGTC-TCAACGGGATAAAAATTTCTGTCAATGACTCGGTTT 111151 | |||| ||||| || || | || || ||| ||||||| ||||| | | | | Sbjct 1694 TTGTTAGACACTTTGGC---TTCTTTAATAGGGTAATAATTTCTTTCAATTATTTTATCT 1638 Query 111152 AGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 111201 |||||| | |||| ||| ||||| ||||||| | ||||| | ||| ||| Sbjct 1637 AGATTTCTAGTAATAATTTTTGTAATTTCATATAATTTTTTAAAATTAAA 1588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627974927592000