Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1378 131 2e-25 seq1502 84.2 3e-11 >seq1378 Length=4202 Score = 131 bits (144), Expect = 2e-25 Identities = 837/1327 (63%), Gaps = 30/1327 (2%) Strand=Plus/Plus Query 104299 GATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAA 104357 |||||| ||| ||| |||| ||| || |||||||| | || ||| ||||||| || | Sbjct 780 GATGTCTCAAAAATAT-TTCACTCATGCTACACCAACATTATTTAATTCTGGTACTCCTA 838 Query 104358 GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCT 104417 ||||||||||||| ||| || ||| | | | || || ||||| | ||||| | Sbjct 839 GACCCCAAATGTCGTCTTGTTTTCTTTTATCTATGAAATCAGATTCAATAGAAGGTATAT 898 Query 104418 ATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGAT-GCAC 104476 | ||| || | ||||||| | || || ||||| ||||| || | ||| Sbjct 899 TCGAAACACTAAAACAGTGTGCTCTTATTAGTAAAACAGCTGGTGGTATAGGTGTAGCAG 958 Query 104477 ATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGT 104536 | || ||| | |||| | || || |||| | || || ||||| ||| |||| Sbjct 959 -TACAAGATATAAGAGGACAAAATTCGTATATTAGAGGTACGAATGGAATTTCAAATGGA 1017 Query 104537 ATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT 104596 | | || ||| | | || ||||| | ||||| | |||||| |||||| || | Sbjct 1018 CTCGTACCTATGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAAGGAGGAGGA 1077 Query 104597 C---GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTC 104653 |||| || ||| | || || ||| |||| |||||||| | ||||| | || || Sbjct 1078 AAAAGAAAAGGTTCTTTTGCTGTTTATATTGAACCATGGCATTCAGATATATTCGAATTT 1137 Query 104654 CTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCT 104713 | || || | || || || | || || | | ||| | || | ||| Sbjct 1138 TTAGATTTAAGAAAAAATCATGGCAAAGAAGAATTAAGAGCAAGAGATTTGTTTTATGCT 1197 Query 104714 CTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTT 104773 | ||| |||| || | |||||||| ||||| | || | | |||||| || | | Sbjct 1198 GTTTGGGTTCCTGACTTGTTCATGAAAAGAGTAAAAGAAAATCAAAATTGGACTTTAATG 1257 Query 104774 TGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTA 104832 |||||| | || || || || || || | |||||| || |||||| | || Sbjct 1258 TGTCCAAATGAATGC-CCAGGACTAAGTGAAACATGGGGTGAAGAATTTGAAAAATTATA 1316 Query 104833 CACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAA 104892 ||||| || |||||| | || | || || ||| ||| | ||| Sbjct 1317 TGTTAAGTATGAAGAAGAAAATATGGGCAAAAAAACTGTATTAGCACAAGATTTATGGTT 1376 Query 104893 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTG 104952 ||||| | | ||||| || || ||| ||||| ||| | || |||||| | || Sbjct 1377 TGCTATATTACAAAGTCAAATTGAAACAGGTGTTCCATATATGTTATATAAAGACTCATG 1436 Query 104953 TAAC-CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAG 105011 ||| | ||| | |||||||| ||| | ||| ||||| || ||| | ||| | Sbjct 1437 TAATGCTAAATCG-AATCAAAAAAATCTAGGTACTATCAAATGTAGTAATTTGTGTTGTG 1495 Query 105012 AAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTC 105071 |||| | || | ||| ||||| ||||| ||||| || || || || ||| Sbjct 1496 AAATTATTGAGTATACTTCACCTGATGAAGTTGCTGTATGTAATCTTGCTTCTATTGCTT 1555 Query 105072 TCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTA 105131 | ||| | |||||| || | ||| |||| ||| | ||||| | | ||| ||| Sbjct 1556 TATGCAAATTTGTGGACTTGGAAAAAAAAGAATTTAATTTTAAAAAATTATATGAAATTA 1615 Query 105132 CGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGA 105191 | |||| | | || | ||| ||| | | | | ||||| ||||||| |||||| || | Sbjct 1616 CAAAAATTATTACTAGAAATCTAGATAAAATAATTGAAAGAAATTATTACCCTATTAAAG 1675 Query 105192 CTGCTCGTAAA---TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCG 105248 || ||| ||||| | ||| || | || || ||| | ||||||||||| | | Sbjct 1676 AAGCC---AAAGTGTCTAACAAGAGGCATAGACCTATAGGTATAGGTGTTCAGGGGTTAG 1732 Query 105249 CGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATG 105308 | ||| || || |||| | | | | ||| || || ||||| || || | ||| Sbjct 1733 CAGATACTTTTATGCTTTTGAGATATCCCTATGAGTCGGATGAAGCTAAAGAGTTGAATA 1792 Query 105309 CGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGG 105368 | ||||| || |||||||| | || ||| | || | | || || ||| | Sbjct 1793 GAAGAATATTCGAAACCATGTACTATGCTGCTTTAGAAATGTCTATGGAATTAGCAATGA 1852 Query 105369 TTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTG 105428 || |||| || |||||| | | | ||||| ||||||| ||||| | || ||||||| Sbjct 1853 TTCATGGACCTTATGAATCTTATCAGGGTAGTCCAGCTAGTCAAGGTATTCTACAATTTG 1912 Query 105429 ATATGTGG-----GAAGGT-GAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAAC 105482 |||||||| ||||| || | ||| ||| | ||||| | || || | | Sbjct 1913 ATATGTGGAATAAAAAGGTAGATAGTAAG---TACTGGAATTGGGATGAACT-AAAGCTC 1968 Query 105483 GCATCAAGGAGA-AGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCC 105541 | | | | | | ||| | | || | | || | || || |||||||| || || Sbjct 1969 AAAATACGTAAACATGGTTTAAGGAATTCTTTACTACTTGCACCTATGCCAACTGCTTCT 2028 Query 105542 ACCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCT 105600 || | ||||| |||||| ||||| |||| ||||||||| || || | ||||| ||| Sbjct 2029 ACATCTCAAATACTTGGG-AATAACGAATCCTTTGAACCTTATACTAGTAACATTTATTA 2087 Query 105601 GAGAAGA 105607 |||||| Sbjct 2088 TAGAAGA 2094 >seq1502 Length=19671 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 94395 GTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAA--TGAGTAATTGGACTGCTGAA 94452 ||||||| || | ||||| | ||||| || || || | | | |||||| || ||| Sbjct 5045 GTATCCAGACGTATGGGACTTTTATAAAAAAGCAGAAGCTTCATT--TTGGACAGCAGAA 5102 Query 94453 GAGGTAGATCTCTCAAAGGATTTGGACGATTG-GAAGACTCTAAATGAAAATGAAAAGAA 94511 ||| ||||| | |||| |||||| | |||| ||| | | |||||||||||||||| | Sbjct 5103 GAGATAGATTTATCAAGCGATTTGAAAGATTTTGAAAAAT-TAAATGAAAATGAAAAACA 5161 Query 94512 ATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAAT 94569 || |||||| | | | ||||| ||||| | | |||||||| ||||| || ||| Sbjct 5162 TTTTATAAAACATGTGTTAGCATTTTTTGCAGCAAGTGATGGAATAGTTTTAGAAAAT 5219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583207796174800