Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq291 82.4 6e-11 >seq291 Length=4955 Score = 82.4 bits (90), Expect = 6e-11 Identities = 191/282 (68%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 111657 TTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTA-AGCTGTAATTGTAAAGGCT 111715 |||||||| || |||| |||||| |||| | || | | ||||| || ||| ||| Sbjct 4396 TTTAATTTA-AGAGTTGGGAAGGGG-TAGGGTATCCTATTTAACTGTACTTTTAA--GCT 4341 Query 111716 GT--ATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTC 111773 || || ||||| ||||||||| |||| ||||| | ||| || || | ||||| Sbjct 4340 GTCAATATGATTATTATAAACATGTGCATTTCCTAAAATATGTATGAACTGTGCAGGCTG 4281 Query 111774 CAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGG 111833 ||| | | ||||||||||| | |||| || || ||||| ||||| || Sbjct 4280 TAAATTACACACTTGTGCAATCATATGAGTGAATATTGAATAGGAGGCAATATTAAAAGG 4221 Query 111834 CACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGA 111893 || |||| || | ||| | || |||||||| | |||||||| ||| | | Sbjct 4220 GACTCCTAAACCTAAATCACATGACCTTTGATACATAATACATGATAATTTTCCATCAAA 4161 Query 111894 CACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 ||||||||||| || | | |||||||||||| | |||||| Sbjct 4160 AACATAAAATTGGCATAAAATATGACAAGGAGGTAGTGCCAT 4119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391910872395010