Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1821 107 4e-18 seq709 86.0 1e-11 >seq1821 Length=1654 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| || || ||||||||||| ||||| ||||||| | || ||||| Sbjct 391 TCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCC 450 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || || || | | ||||| ||||| |||| ||||||||| Sbjct 451 ATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 510 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || || || || || || || || || || || |||||| || ||||| || Sbjct 511 GTCTTGTATTTTAGCCTTAACATTCTCAATAGTATCCGATGGTTCAACATCAAGAGTTAT 570 Query 211079 CGTCTTTCC 211087 || ||||| Sbjct 571 AGTTTTTCC 579 >seq709 Length=11950 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 114617 GCATTTCTTTTGGATACTGACCCAGAAGAAAGGAAAAGAGGAAAAACTGTGGAGTTTGCC 114676 |||||| || |||||| | | |||||| || ||| |||||||||||| || | | Sbjct 6700 GCATTTATTATGGATATTAATGAAGAAGAGAGACAAAAAGGAAAAACTGTAGAAGTAGGA 6641 Query 114677 CGCGAGCCGTTTGTTTGGAACAA----CAGAAACTTTACAATCTTGGATGCACCGGGTCA 114732 | ||| || ||| ||||| ||||| |||||||| | ||||| ||||| || Sbjct 6640 AG--AGCACATT--TTGAAACAAAGGACAGAAGATTTACAATTCTTGATGCTCCGGGACA 6585 Query 114733 TCGAAATTTCATTCCCAATGCCATCGAGGGACTTGCGAACGCTGACGTTTGTGTTCTTGT 114792 | |||||| ||||| ||| || || ||| | ||||| ||| ||||| | | Sbjct 6584 TAAAAATTTTATTCCAAATATGATTAGTGGTGCTGCTCAAGCTGATGTTGGTGTTTTAAT 6525 Query 114793 CGTTTCGGCGAGAAAGGGAGAATTTGAA 114820 ||||| || ||||||||||||||||| Sbjct 6524 TGTTTCCGCACGAAAGGGAGAATTTGAA 6497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159044028613550