Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1821 95.1 3e-14 seq168 95.1 3e-14 >seq1821 Length=1654 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || || |||||||| | |||||||| | ||| ||||| |||||||||| || Sbjct 403 GTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCTTCTAATTG 462 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || || || | || ||||| || || ||||| |||||||||||||| || || Sbjct 463 TTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGTATTTT 522 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| ||| || || || || || | ||| || || | || || || || || Sbjct 523 AGCCTTAACATTCTCAATAGTATCCGATGGTTCAACATCAAGAGTTATAGTTTTTCC 579 >seq168 Length=9956 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 ||||| ||||| ||||||| ||| | |||| |||||||||||||| |||||||| ||| Sbjct 1328 GCCCCTTACACTGGTTGTGCTATGGCTGAATTCTTTAGAGATAATGGAAAACATGCATTA 1387 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 ||||| | || ||||||||||||||| Sbjct 1388 ATCATATTTGACGATTTAAGTAAACAA 1414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192420119445380